Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLPHHPNB_79 | 152924 | 154898 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| CLPHHPNB_79 | 43140 | 43874 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| CLPHHPNB_48 | 16975 | 18180 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLPHHPNB_79 | 152972 | 154897 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| CLPHHPNB_79 | 43140 | 43874 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| CLPHHPNB_79 | 40905 | 42368 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| CLPHHPNB_79 | 39565 | 40779 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLPHHPNB_48 | 18205 | 18714 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CLPHHPNB_79 | 152972 | 154894 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| CLPHHPNB_79 | 43140 | 43871 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| CLPHHPNB_48 | 16975 | 18177 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CLPHHPNB_79 | 40905 | 42365 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| CLPHHPNB_79 | 39565 | 40788 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CLPHHPNB_1 | 48088 | 49668 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLPHHPNB_1 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_2 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_3 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_4 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_5 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_6 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_7 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_8 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_9 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_10 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_11 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_12 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_13 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_14 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_15 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_16 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_17 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_18 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_19 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_20 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_21 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_22 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_23 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_24 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_25 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_26 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_27 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_28 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_29 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_30 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_32 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_33 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_34 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_35 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_36 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_37 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_38 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_39 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_40 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_41 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_42 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_43 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_44 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_45 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_46 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_47 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_48 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_49 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_50 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_51 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_52 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_53 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_54 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_55 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_56 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_57 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_58 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_59 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_60 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_61 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_63 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_64 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_65 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_66 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_67 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_69 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_70 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_71 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_72 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_73 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_74 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_75 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_76 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_77 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_78 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_79 | 0.0 | 1.0 | 0.0 |
| CLPHHPNB_80 | 1.0 | 0.0 | 1.0 |
| CLPHHPNB_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLPHHPNB_47 | 273121 | 281640 | False | Unknown | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)