Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEIGBEDP_44 | 212278 | 214203 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JEIGBEDP_46 | 13620 | 14786 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JEIGBEDP_46 | 13620 | 14786 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| JEIGBEDP_46 | 14999 | 15799 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| JEIGBEDP_44 | 212278 | 214203 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEIGBEDP_46 | 13620 | 14783 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JEIGBEDP_46 | 15002 | 15799 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | INTERNAL_STOP | 99.62 | 100.00 | WP_002682030.1 |
| JEIGBEDP_44 | 212281 | 214203 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEIGBEDP_1 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_2 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_3 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_4 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_5 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_6 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_7 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_8 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_9 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_10 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_11 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_12 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_13 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_14 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_15 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_16 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_17 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_18 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_19 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_20 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_21 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_22 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_23 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_24 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_25 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_26 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_27 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_28 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_29 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_30 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_31 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_32 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_33 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_34 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_35 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_36 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_37 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_38 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_39 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_40 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_41 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_42 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_43 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_44 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_45 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_46 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_47 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_48 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_49 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_50 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_51 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_53 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_54 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_55 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_56 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_57 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_58 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_59 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_60 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_61 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_62 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_63 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_64 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_65 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_66 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_67 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_68 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_69 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_70 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_71 | 1.0 | 0.0 | 1.0 |
| JEIGBEDP_72 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_73 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_74 | 0.0 | 1.0 | 0.0 |
| JEIGBEDP_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEIGBEDP_1 | 141620 | 149805 | False | Unknown | VOG4573, |
| JEIGBEDP_2 | 156436 | 168956 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)