Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKMKPEFA_7 | 123313 | 124278 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HKMKPEFA_7 | 123313 | 124278 | cfxA3 | Ampicillin | 99.38 | 100.00 | AF472622 |
| HKMKPEFA_7 | 123313 | 124278 | cfxA4 | Unknown Beta-lactam | 99.38 | 100.00 | AY769933 |
| HKMKPEFA_7 | 123313 | 124278 | cfxA5 | Unknown Beta-lactam | 99.38 | 100.00 | AY769934 |
| HKMKPEFA_7 | 123313 | 124278 | cfxA | Cefoxitin, Ampicillin | 99.38 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKMKPEFA_7 | 123316 | 124278 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKMKPEFA_87 | 74618 | 73038 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKMKPEFA_1 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_2 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_3 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_4 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_5 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_6 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_7 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_8 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_9 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_10 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_11 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_12 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_13 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_14 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_15 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_16 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_17 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_18 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_19 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_20 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_21 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_22 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_23 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_24 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_25 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_26 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_27 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_28 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_29 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_30 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_31 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_32 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_33 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_34 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_35 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_36 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_37 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_38 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_39 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_40 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_41 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_42 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_43 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_44 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_45 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_46 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_47 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_48 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_49 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_50 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_51 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_52 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_53 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_54 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_55 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_56 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_57 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_58 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_59 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_60 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_61 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_62 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_63 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_64 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_65 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_66 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_68 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_69 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_70 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_71 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_72 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_73 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_74 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_75 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_76 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_77 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_78 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_79 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_80 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_81 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_82 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_83 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_84 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_85 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_86 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_87 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_88 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_89 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_90 | 0.0 | 1.0 | 0.0 |
| HKMKPEFA_91 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_92 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_93 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_94 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_95 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_96 | 1.0 | 0.0 | 1.0 |
| HKMKPEFA_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKMKPEFA_1 | 79216 | 89877 | False | Unknown | VOG0982, |
| HKMKPEFA_1 | 134791 | 147123 | False | Myoviridae | VOG7168, |
Phigaro v2.4.0 (Database: Jan. 2024 release)