Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDBJCAIK_25 | 60848 | 62822 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PDBJCAIK_74 | 2186 | 2920 | ErmG | ARO:3000522 | ErmG | 98.77 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDBJCAIK_25 | 60896 | 62821 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PDBJCAIK_74 | 2186 | 2920 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| PDBJCAIK_107 | 181 | 1241 | mef(A) | Erythromycin, Azithromycin | 95.10 | 87.11 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDBJCAIK_19 | 92585 | 93490 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| PDBJCAIK_25 | 60896 | 62818 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PDBJCAIK_74 | 2189 | 2920 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_063844791.1 |
| PDBJCAIK_107 | 184 | 1248 | mef(A) | macrolide efflux MFS transporter Mef(A) | PARTIALX | 98.31 | 87.01 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDBJCAIK_54 | 255592 | 254012 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PDBJCAIK_83 | 1884 | 2464 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDBJCAIK_1 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_2 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_3 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_4 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_5 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_6 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_7 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_8 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_9 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_10 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_11 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_12 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_13 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_14 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_15 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_16 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_17 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_18 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_19 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_20 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_21 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_22 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_23 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_24 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_25 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_26 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_27 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_28 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_29 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_30 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_31 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_32 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_33 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_34 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_35 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_36 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_37 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_38 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_39 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_40 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_41 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_42 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_43 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_44 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_45 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_46 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_47 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_48 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_49 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_50 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_51 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_52 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_53 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_54 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_55 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_56 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_57 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_58 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_59 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_60 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_61 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_62 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_63 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_64 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_65 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_66 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_67 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_68 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_69 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_70 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_72 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_73 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_74 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_75 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_76 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_77 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_78 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_79 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_80 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_81 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_82 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_83 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_84 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_85 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_86 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_87 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_88 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_89 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_90 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_91 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_92 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_93 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_94 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_95 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_96 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_97 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_98 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_99 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_100 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_101 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_102 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_103 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_104 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_105 | 0.0 | 1.0 | 0.0 |
| PDBJCAIK_106 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_107 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_108 | 1.0 | 0.0 | 1.0 |
| PDBJCAIK_109 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDBJCAIK_21 | 153625 | 157051 | False | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)