Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEHBEOGD_41 | 3479 | 5452 | tet(Q) | ARO:3000191 | tet(Q) | 97.11 | 100.00 | Z21523.1 |
| NEHBEOGD_42 | 2580 | 3380 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NEHBEOGD_41 | 3527 | 5452 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| NEHBEOGD_42 | 2580 | 3380 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEHBEOGD_41 | 3527 | 5449 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| NEHBEOGD_42 | 2580 | 3377 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NEHBEOGD_62 | 806 | 1485 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEHBEOGD_1 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_2 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_3 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_4 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_5 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_6 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_7 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_8 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_9 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_10 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_11 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_12 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_13 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_14 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_15 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_16 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_17 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_18 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_19 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_20 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_21 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_22 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_23 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_24 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_25 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_26 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_27 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_28 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_29 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_30 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_31 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_32 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_33 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_34 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_35 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_36 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_37 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_38 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_39 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_40 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_41 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_42 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_43 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_44 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_45 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_46 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_47 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_48 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_49 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_50 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_51 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_52 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_53 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_54 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_55 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_56 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_58 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_59 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_60 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_62 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_63 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_64 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_65 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_66 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_67 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_68 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_69 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_70 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_71 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_72 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_73 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_74 | 1.0 | 0.0 | 1.0 |
| NEHBEOGD_75 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_76 | 0.0 | 1.0 | 0.0 |
| NEHBEOGD_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEHBEOGD_20 | 10674 | 13003 | False | Siphoviridae | VOG4568, |
| NEHBEOGD_44 | 28995 | 41024 | True | Unknown | VOG10904, |
Phigaro v2.4.0 (Database: Jan. 2024 release)