Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHEGEBGF_73 | 90787 | 92712 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| FHEGEBGF_31 | 24811 | 25674 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| FHEGEBGF_31 | 23499 | 24635 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| FHEGEBGF_31 | 22161 | 23300 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FHEGEBGF_73 | 90787 | 92712 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| FHEGEBGF_31 | 23469 | 24635 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHEGEBGF_31 | 24811 | 25671 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| FHEGEBGF_31 | 23469 | 24632 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| FHEGEBGF_31 | 22161 | 23297 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| FHEGEBGF_73 | 90790 | 92712 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FHEGEBGF_14 | 37622 | 36042 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FHEGEBGF_60 | 1902 | 2581 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FHEGEBGF_1 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_2 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_3 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_4 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_5 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_6 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_7 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_8 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_9 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_10 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_11 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_12 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_13 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_14 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_15 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_16 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_17 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_18 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_19 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_20 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_21 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_22 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_23 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_24 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_25 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_26 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_27 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_28 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_29 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_30 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_31 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_32 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_33 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_34 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_35 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_36 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_37 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_38 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_39 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_40 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_41 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_42 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_43 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_44 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_45 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_46 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_47 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_48 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_49 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_50 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_51 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_52 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_53 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_54 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_55 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_57 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_58 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_59 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_60 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_61 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_62 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_63 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_64 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_65 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_66 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_67 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_68 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_69 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_70 | 1.0 | 0.0 | 1.0 |
| FHEGEBGF_71 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_72 | 0.0 | 1.0 | 0.0 |
| FHEGEBGF_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FHEGEBGF_11 | 144897 | 160041 | True | Siphoviridae | VOG4551, |
| FHEGEBGF_22 | 104198 | 117570 | False | Myoviridae | VOG7323, |
Phigaro v2.4.0 (Database: Jan. 2024 release)