Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDEECLCP_33 | 105051 | 106976 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GDEECLCP_120 | 16236 | 18161 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GDEECLCP_33 | 105051 | 106976 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GDEECLCP_120 | 18448 | 19247 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 99.88 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDEECLCP_33 | 105051 | 106973 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GDEECLCP_120 | 18651 | 19247 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 98.99 | 74.81 | WP_002682030.1 |
| GDEECLCP_120 | 16239 | 18161 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GDEECLCP_17 | 144 | 823 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GDEECLCP_1 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_2 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_3 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_4 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_5 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_6 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_7 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_8 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_10 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_11 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_12 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_13 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_14 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_15 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_16 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_17 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_18 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_19 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_20 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_21 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_22 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_23 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_24 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_25 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_26 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_27 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_28 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_29 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_30 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_31 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_32 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_33 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_34 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_35 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_36 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_37 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_38 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_39 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_40 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_41 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_42 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_43 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_44 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_45 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_46 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_47 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_48 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_49 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_50 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_51 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_52 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_53 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_54 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_55 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_56 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_57 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_58 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_59 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_60 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_61 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_62 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_63 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_64 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_65 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_66 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_67 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_68 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_69 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_70 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_71 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_72 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_73 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_74 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_75 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_76 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_77 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_78 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_79 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_80 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_81 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_82 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_83 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_84 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_85 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_86 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_87 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_88 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_89 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_90 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_91 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_92 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_93 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_94 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_95 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_96 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_97 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_98 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_99 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_100 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_101 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_102 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_103 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_104 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_105 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_106 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_107 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_108 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_109 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_110 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_111 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_112 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_113 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_114 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_115 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_116 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_117 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_118 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_119 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_120 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_121 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_122 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_123 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_124 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_125 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_126 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_127 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_128 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_129 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_130 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_131 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_132 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_133 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_134 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_135 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_136 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_137 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_138 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_139 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_140 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_141 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_142 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_143 | 0.0 | 1.0 | 0.0 |
| GDEECLCP_144 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_145 | 1.0 | 0.0 | 1.0 |
| GDEECLCP_146 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GDEECLCP_60 | 20733 | 34976 | False | Unknown | VOG4572, |
| GDEECLCP_102 | 162233 | 167007 | False | Siphoviridae | VOG4556, |
Phigaro v2.4.0 (Database: Jan. 2024 release)