Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEIGILCJ_26 | 29649 | 30449 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| MEIGILCJ_26 | 28204 | 29343 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| MEIGILCJ_26 | 26869 | 28005 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| MEIGILCJ_26 | 25830 | 26693 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| MEIGILCJ_42 | 4630 | 6555 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MEIGILCJ_42 | 4630 | 6555 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| MEIGILCJ_26 | 26869 | 28035 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| MEIGILCJ_26 | 29649 | 30449 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
| MEIGILCJ_14 | 47112 | 48062 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| MEIGILCJ_14 | 47112 | 48062 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| MEIGILCJ_14 | 47112 | 48062 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| MEIGILCJ_14 | 47112 | 48062 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEIGILCJ_26 | 25833 | 26693 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| MEIGILCJ_26 | 26872 | 28035 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| MEIGILCJ_26 | 28207 | 29343 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| MEIGILCJ_42 | 4633 | 6555 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| MEIGILCJ_26 | 29649 | 30446 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
| MEIGILCJ_14 | 47111 | 48064 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEIGILCJ_11 | 220123 | 218543 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEIGILCJ_1 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_2 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_3 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_4 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_5 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_6 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_7 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_8 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_9 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_10 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_11 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_12 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_13 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_14 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_15 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_16 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_17 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_18 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_19 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_20 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_21 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_22 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_23 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_24 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_25 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_26 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_27 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_28 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_29 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_30 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_31 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_32 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_33 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_34 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_35 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_36 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_37 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_38 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_39 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_40 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_41 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_42 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_43 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_44 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_45 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_46 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_47 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_48 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_50 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_51 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_52 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_53 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_54 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_55 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_56 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_57 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_58 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_59 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_60 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_61 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_62 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_63 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_64 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_65 | 1.0 | 0.0 | 1.0 |
| MEIGILCJ_66 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_67 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_68 | 0.0 | 1.0 | 0.0 |
| MEIGILCJ_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)