Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMOPHKOA_11 | 492940 | 494145 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| OMOPHKOA_5 | 51268 | 53193 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| OMOPHKOA_23 | 15019 | 15858 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.89 | M17124.1 |
| OMOPHKOA_23 | 13640 | 14806 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMOPHKOA_23 | 15019 | 15819 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| OMOPHKOA_23 | 13640 | 14806 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| OMOPHKOA_5 | 51268 | 53193 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMOPHKOA_23 | 15022 | 15819 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| OMOPHKOA_11 | 492406 | 492915 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OMOPHKOA_23 | 13640 | 14803 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| OMOPHKOA_5 | 51271 | 53193 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OMOPHKOA_11 | 492943 | 494145 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OMOPHKOA_37 | 1945 | 2624 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMOPHKOA_1 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_2 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_3 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_4 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_5 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_6 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_7 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_8 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_9 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_10 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_11 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_12 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_13 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_14 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_15 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_16 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_17 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_18 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_19 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_20 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_21 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_22 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_23 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_24 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_25 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_26 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_27 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_28 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_29 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_30 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_31 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_33 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_34 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_35 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_36 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_37 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_38 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_39 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_40 | 1.0 | 0.0 | 1.0 |
| OMOPHKOA_41 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_42 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_43 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_44 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_45 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_46 | 0.0 | 1.0 | 0.0 |
| OMOPHKOA_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMOPHKOA_11 | 255961 | 264146 | False | Unknown | VOG4573, |
| OMOPHKOA_46 | 169741 | 181292 | False | Unknown | VOG5562, |
| OMOPHKOA_46 | 212966 | 224597 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)