Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCOFPGFE_49 | 22323 | 23288 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
| JCOFPGFE_23 | 9837 | 10727 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JCOFPGFE_49 | 22323 | 23288 | cfxA3 | Ampicillin | 99.38 | 100.00 | AF472622 |
| JCOFPGFE_49 | 22323 | 23288 | cfxA4 | Unknown Beta-lactam | 99.38 | 100.00 | AY769933 |
| JCOFPGFE_49 | 22323 | 23288 | cfxA5 | Unknown Beta-lactam | 99.38 | 100.00 | AY769934 |
| JCOFPGFE_49 | 22323 | 23288 | cfxA | Cefoxitin, Ampicillin | 99.38 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCOFPGFE_23 | 9840 | 10727 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| JCOFPGFE_49 | 22326 | 23288 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JCOFPGFE_1 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_2 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_3 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_4 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_5 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_6 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_7 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_8 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_9 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_10 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_11 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_12 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_13 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_14 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_15 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_16 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_17 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_18 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_19 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_20 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_21 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_22 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_23 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_24 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_25 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_26 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_27 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_28 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_29 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_30 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_31 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_32 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_33 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_34 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_35 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_36 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_37 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_38 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_39 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_40 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_41 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_42 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_43 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_44 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_45 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_46 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_47 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_48 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_49 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_50 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_51 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_52 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_53 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_54 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_55 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_56 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_57 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_58 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_59 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_60 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_61 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_62 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_63 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_64 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_65 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_66 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_67 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_69 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_70 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_71 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_72 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_73 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_74 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_75 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_76 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_77 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_78 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_79 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_80 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_81 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_82 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_83 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_84 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_85 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_86 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_87 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_88 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_89 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_90 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_91 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_92 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_93 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_94 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_95 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_96 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_97 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_98 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_99 | 0.0 | 1.0 | 0.0 |
| JCOFPGFE_100 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_101 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_102 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_103 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_104 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_105 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_106 | 1.0 | 0.0 | 1.0 |
| JCOFPGFE_107 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JCOFPGFE_36 | 12599 | 27131 | True | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)