Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDBGJKEA_76 | 11223 | 12023 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| EDBGJKEA_76 | 9778 | 10917 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| EDBGJKEA_79 | 9701 | 10906 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| EDBGJKEA_76 | 8443 | 9609 | tet(X) | ARO:3000205 | tet(X) | 99.23 | 100.00 | M37699.1 |
| EDBGJKEA_76 | 7404 | 8267 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDBGJKEA_76 | 11223 | 12023 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| EDBGJKEA_76 | 8443 | 9609 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDBGJKEA_76 | 7407 | 8267 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| EDBGJKEA_114 | 253 | 1158 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| EDBGJKEA_79 | 9167 | 9676 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| EDBGJKEA_76 | 9781 | 10917 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| EDBGJKEA_76 | 8446 | 9609 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| EDBGJKEA_76 | 11223 | 12020 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| EDBGJKEA_79 | 9704 | 10906 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDBGJKEA_71 | 11354 | 12934 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDBGJKEA_112 | 1789 | 2468 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDBGJKEA_1 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_2 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_3 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_4 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_5 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_6 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_7 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_8 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_9 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_10 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_11 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_12 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_13 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_14 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_15 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_16 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_17 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_18 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_19 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_20 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_21 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_22 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_23 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_24 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_25 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_26 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_27 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_28 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_29 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_30 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_31 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_32 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_33 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_34 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_35 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_36 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_37 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_38 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_39 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_40 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_41 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_42 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_43 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_44 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_45 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_46 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_47 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_48 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_49 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_50 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_51 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_52 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_53 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_54 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_55 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_56 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_57 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_58 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_59 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_60 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_61 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_62 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_63 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_64 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_65 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_66 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_67 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_68 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_69 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_70 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_71 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_72 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_73 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_74 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_75 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_76 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_77 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_78 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_79 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_80 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_81 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_82 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_83 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_84 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_85 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_86 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_87 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_88 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_89 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_90 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_91 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_92 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_93 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_94 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_95 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_97 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_98 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_99 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_100 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_101 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_102 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_103 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_104 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_105 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_106 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_107 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_108 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_109 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_110 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_111 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_112 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_113 | 0.0 | 1.0 | 0.0 |
| EDBGJKEA_114 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_115 | 1.0 | 0.0 | 1.0 |
| EDBGJKEA_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDBGJKEA_20 | 62523 | 64193 | False | Siphoviridae | VOG2703 |
| EDBGJKEA_40 | 23614 | 33365 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)