Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEPDBBNP_73 | 150484 | 151449 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| JEPDBBNP_91 | 34473 | 35207 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| JEPDBBNP_86 | 18046 | 19971 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JEPDBBNP_73 | 150484 | 151449 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JEPDBBNP_91 | 34473 | 35207 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| JEPDBBNP_86 | 18046 | 19971 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEPDBBNP_73 | 150487 | 151449 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JEPDBBNP_91 | 34473 | 35204 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| JEPDBBNP_86 | 18049 | 19971 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEPDBBNP_1 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_2 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_3 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_4 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_5 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_6 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_8 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_9 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_10 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_11 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_12 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_13 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_14 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_16 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_17 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_18 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_19 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_20 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_21 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_22 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_23 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_24 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_25 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_27 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_28 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_29 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_30 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_31 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_32 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_33 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_34 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_35 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_36 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_37 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_38 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_39 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_40 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_41 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_42 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_43 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_44 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_45 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_46 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_47 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_48 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_49 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_50 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_51 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_52 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_53 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_54 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_55 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_56 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_57 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_58 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_59 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_60 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_61 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_62 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_63 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_64 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_65 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_66 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_67 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_68 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_69 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_70 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_71 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_72 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_73 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_74 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_75 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_76 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_77 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_78 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_79 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_80 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_81 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_82 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_83 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_84 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_85 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_86 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_87 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_88 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_89 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_90 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_91 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_92 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_93 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_94 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_95 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_96 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_97 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_98 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_99 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_100 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_101 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_102 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_103 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_104 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_105 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_106 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_107 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_108 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_109 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_110 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_111 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_112 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_113 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_114 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_115 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_116 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_117 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_118 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_119 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_120 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_121 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_122 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_123 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_124 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_125 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_126 | 0.0 | 1.0 | 0.0 |
| JEPDBBNP_127 | 1.0 | 0.0 | 1.0 |
| JEPDBBNP_128 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEPDBBNP_39 | 56686 | 65325 | False | Siphoviridae | VOG7238, |
| JEPDBBNP_87 | 14065 | 24408 | False | Unknown | VOG5235, |
Phigaro v2.4.0 (Database: Jan. 2024 release)