Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DADJJIOI_11 | 184650 | 185615 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DADJJIOI_7 | 113755 | 114489 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| DADJJIOI_26 | 34022 | 35995 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DADJJIOI_11 | 184650 | 185615 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DADJJIOI_11 | 184650 | 185615 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DADJJIOI_11 | 184650 | 185615 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DADJJIOI_11 | 184650 | 185615 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| DADJJIOI_26 | 34022 | 35947 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DADJJIOI_7 | 113755 | 114489 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| DADJJIOI_7 | 115261 | 116158 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.22 | 61.34 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DADJJIOI_11 | 184653 | 185615 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DADJJIOI_7 | 113758 | 114489 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| DADJJIOI_26 | 34025 | 35947 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DADJJIOI_7 | 115264 | 116157 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | PARTIALX | 96.31 | 61.19 | WP_000420317.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DADJJIOI_24 | 12410 | 10830 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DADJJIOI_1 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_2 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_3 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_4 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_5 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_6 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_7 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_8 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_9 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_10 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_11 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_12 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_13 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_14 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_15 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_16 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_17 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_18 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_19 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_20 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_21 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_22 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_23 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_24 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_25 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_26 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_27 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_28 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_29 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_30 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_31 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_32 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_33 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_34 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_35 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_36 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_37 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_38 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_39 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_40 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_41 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_42 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_43 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_44 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_45 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_47 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_49 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_50 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_51 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_52 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_53 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_54 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_55 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_56 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_57 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_58 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_59 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_60 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_61 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_62 | 1.0 | 0.0 | 1.0 |
| DADJJIOI_63 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_64 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_65 | 0.0 | 1.0 | 0.0 |
| DADJJIOI_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DADJJIOI_1 | 84736 | 90033 | False | Siphoviridae | VOG4618, |
| DADJJIOI_25 | 18576 | 33289 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)