Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BPAEBDBE_8 | 116008 | 117213 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| BPAEBDBE_4 | 42791 | 43756 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| BPAEBDBE_81 | 11413 | 13338 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BPAEBDBE_4 | 42791 | 43756 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| BPAEBDBE_4 | 42791 | 43756 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| BPAEBDBE_4 | 42791 | 43756 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| BPAEBDBE_4 | 42791 | 43756 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| BPAEBDBE_81 | 11413 | 13338 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BPAEBDBE_4 | 42794 | 43756 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| BPAEBDBE_8 | 115474 | 115983 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| BPAEBDBE_81 | 11416 | 13338 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BPAEBDBE_8 | 116011 | 117213 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BPAEBDBE_1 | 55432 | 53852 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BPAEBDBE_54 | 68 | 747 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BPAEBDBE_1 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_2 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_3 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_4 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_5 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_6 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_7 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_8 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_9 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_10 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_11 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_12 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_13 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_14 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_15 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_16 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_17 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_18 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_19 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_20 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_21 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_22 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_23 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_24 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_25 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_26 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_27 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_28 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_29 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_30 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_31 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_32 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_33 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_34 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_35 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_36 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_37 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_38 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_39 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_40 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_41 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_42 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_43 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_44 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_45 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_46 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_47 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_48 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_49 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_50 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_51 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_52 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_53 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_54 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_55 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_57 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_58 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_59 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_60 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_61 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_62 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_63 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_64 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_65 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_66 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_68 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_69 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_70 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_71 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_72 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_73 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_74 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_75 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_76 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_77 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_78 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_79 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_80 | 1.0 | 0.0 | 1.0 |
| BPAEBDBE_81 | 0.0 | 1.0 | 0.0 |
| BPAEBDBE_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BPAEBDBE_32 | 8403 | 22647 | False | Unknown | VOG3992, |
| BPAEBDBE_76 | 176616 | 185929 | False | Siphoviridae | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)