Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHCIKHMJ_50 | 195714 | 196679 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| CHCIKHMJ_77 | 28783 | 29583 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| CHCIKHMJ_77 | 26571 | 28496 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CHCIKHMJ_116 | 10339 | 11073 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| CHCIKHMJ_10 | 2 | 1525 | tet(Q) | ARO:3000191 | tet(Q) | 95.87 | 77.32 | Z21523.1 |
| CHCIKHMJ_12 | 2 | 1525 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 77.32 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHCIKHMJ_50 | 195714 | 196679 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CHCIKHMJ_12 | 1 | 1527 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.80 | 79.28 | L33696 |
| CHCIKHMJ_77 | 28783 | 29583 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| CHCIKHMJ_116 | 10339 | 11073 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| CHCIKHMJ_116 | 4850 | 6313 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| CHCIKHMJ_116 | 3510 | 4724 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHCIKHMJ_50 | 195714 | 196676 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CHCIKHMJ_116 | 10339 | 11070 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| CHCIKHMJ_12 | 2 | 1525 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.41 | 79.25 | WP_063856407.1 |
| CHCIKHMJ_10 | 2 | 1525 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.21 | 79.25 | WP_063856409.1 |
| CHCIKHMJ_77 | 28786 | 29583 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CHCIKHMJ_116 | 4850 | 6310 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| CHCIKHMJ_116 | 3510 | 4733 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| CHCIKHMJ_77 | 26574 | 28496 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHCIKHMJ_121 | 1141 | 1820 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHCIKHMJ_1 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_2 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_3 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_4 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_5 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_6 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_7 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_8 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_9 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_10 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_11 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_12 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_13 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_14 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_15 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_16 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_17 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_18 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_20 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_21 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_22 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_23 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_24 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_25 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_26 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_27 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_28 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_29 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_30 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_31 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_32 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_33 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_34 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_35 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_36 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_37 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_38 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_39 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_40 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_41 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_42 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_43 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_44 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_45 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_46 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_47 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_48 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_49 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_50 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_51 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_52 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_53 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_54 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_55 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_56 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_57 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_58 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_59 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_60 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_61 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_62 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_63 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_64 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_65 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_66 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_67 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_68 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_69 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_70 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_71 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_72 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_73 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_74 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_75 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_76 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_77 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_78 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_79 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_80 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_81 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_82 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_83 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_84 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_85 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_86 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_87 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_88 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_89 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_90 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_91 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_92 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_93 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_94 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_95 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_96 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_97 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_98 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_99 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_100 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_101 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_102 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_103 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_104 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_105 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_106 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_108 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_109 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_110 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_111 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_112 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_113 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_114 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_115 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_116 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_117 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_118 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_119 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_120 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_121 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_122 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_123 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_124 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_125 | 1.0 | 0.0 | 1.0 |
| CHCIKHMJ_126 | 0.0 | 1.0 | 0.0 |
| CHCIKHMJ_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHCIKHMJ_69 | 12103 | 20288 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)