Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOLBOGOA_3 | 169984 | 170874 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| OOLBOGOA_67 | 115917 | 116882 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| OOLBOGOA_5 | 115204 | 115938 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| OOLBOGOA_1 | 111426 | 113351 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OOLBOGOA_67 | 115917 | 116882 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| OOLBOGOA_1 | 111426 | 113351 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| OOLBOGOA_5 | 115204 | 115938 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| OOLBOGOA_33 | 792 | 2255 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| OOLBOGOA_33 | 2381 | 3595 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOLBOGOA_67 | 115920 | 116882 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| OOLBOGOA_5 | 115207 | 115938 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| OOLBOGOA_1 | 111426 | 113348 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OOLBOGOA_3 | 169984 | 170871 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| OOLBOGOA_33 | 795 | 2255 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| OOLBOGOA_33 | 2372 | 3595 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OOLBOGOA_47 | 86 | 765 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OOLBOGOA_1 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_2 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_3 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_4 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_5 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_6 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_7 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_8 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_9 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_10 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_11 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_12 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_13 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_14 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_15 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_16 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_17 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_18 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_19 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_20 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_21 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_22 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_23 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_24 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_25 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_26 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_27 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_28 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_29 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_30 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_31 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_32 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_33 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_34 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_35 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_36 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_37 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_38 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_39 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_40 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_41 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_42 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_43 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_44 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_45 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_46 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_47 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_48 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_49 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_50 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_52 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_53 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_54 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_55 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_56 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_57 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_58 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_59 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_60 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_61 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_62 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_63 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_64 | 1.0 | 0.0 | 1.0 |
| OOLBOGOA_65 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_66 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_67 | 0.0 | 1.0 | 0.0 |
| OOLBOGOA_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OOLBOGOA_55 | 227515 | 235391 | False | Unknown | VOG10904, |
| OOLBOGOA_66 | 142744 | 154973 | False | Siphoviridae | VOG4690, |
Phigaro v2.4.0 (Database: Jan. 2024 release)