Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GOLHHDOA_34 | 3 | 1961 | tet(Q) | ARO:3000191 | tet(Q) | 96.48 | 99.39 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GOLHHDOA_34 | 1 | 1913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GOLHHDOA_34 | 3 | 1913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 99.38 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GOLHHDOA_23 | 12429 | 10849 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GOLHHDOA_1 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_2 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_3 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_4 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_5 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_6 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_7 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_8 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_9 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_10 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_11 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_12 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_13 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_14 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_15 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_16 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_17 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_18 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_19 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_20 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_21 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_22 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_23 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_24 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_25 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_26 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_27 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_28 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_29 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_30 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_31 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_32 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_33 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_34 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_35 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_36 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_37 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_38 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_39 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_40 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_41 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_43 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_44 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_45 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_46 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_47 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_48 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_49 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_50 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_51 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_52 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_54 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_55 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_56 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_57 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_58 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_59 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_60 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_61 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_62 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_63 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_64 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_65 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_66 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_67 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_69 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_70 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_71 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_72 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_73 | 1.0 | 0.0 | 1.0 |
| GOLHHDOA_74 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_75 | 0.0 | 1.0 | 0.0 |
| GOLHHDOA_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GOLHHDOA_1 | 168469 | 182953 | False | Myoviridae | VOG2149, |
| GOLHHDOA_6 | 84494 | 91340 | False | Siphoviridae | VOG4618, |
| GOLHHDOA_74 | 19240 | 25814 | True | Unknown | VOG0275, |
| GOLHHDOA_75 | 145700 | 156411 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)