Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGFJAAOD_89 | 55919 | 57139 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
| LGFJAAOD_89 | 53949 | 55868 | tet(O) | ARO:3000190 | tet(O) | 93.43 | 100.00 | M18896.2 |
| LGFJAAOD_89 | 31790 | 32683 | APH(2'')-If | ARO:3004191 | APH(2'')-If | 100.00 | 100.00 | AY701528.1 |
| LGFJAAOD_32 | 5899 | 7818 | tet(32) | ARO:3000196 | tet(32) | 98.75 | 100.00 | EU722333.1 |
| LGFJAAOD_35 | 1559 | 2296 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGFJAAOD_89 | 31790 | 32683 | aph(2'')-If | Amikacin, Gentamicin, Tobramycin, Kanamycin | 100.00 | 100.00 | AY701528 |
| LGFJAAOD_32 | 5899 | 7818 | tet(32) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | EF626943 |
| LGFJAAOD_89 | 53949 | 55868 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | AIOQ01000025 |
| LGFJAAOD_35 | 1559 | 2296 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | X72021 |
| LGFJAAOD_89 | 55919 | 57139 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGFJAAOD_89 | 31790 | 32680 | aph(2'')-If | aminoglycoside O-phosphotransferase APH(2'')-If | EXACTX | 100.00 | 100.00 | WP_021424053.1 |
| LGFJAAOD_32 | 5899 | 7815 | tet(32) | tetracycline resistance ribosomal protection protein Tet(32) | EXACTX | 100.00 | 100.00 | WP_002602099.1 |
| LGFJAAOD_89 | 55919 | 57136 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| LGFJAAOD_35 | 1562 | 2296 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038795.1 |
| LGFJAAOD_89 | 53949 | 55865 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 93.74 | 100.00 | WP_012669445.1 |
| LGFJAAOD_24 | 35883 | 36083 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGFJAAOD_1 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_2 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_3 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_4 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_5 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_6 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_7 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_8 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_9 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_10 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_11 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_12 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_13 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_14 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_15 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_16 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_17 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_18 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_19 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_20 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_21 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_22 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_23 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_24 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_25 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_26 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_27 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_28 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_29 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_30 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_31 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_32 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_33 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_34 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_35 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_36 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_37 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_38 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_39 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_40 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_41 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_42 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_43 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_44 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_45 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_46 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_47 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_48 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_49 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_50 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_51 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_52 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_53 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_54 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_55 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_56 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_57 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_58 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_59 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_60 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_61 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_62 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_63 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_64 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_65 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_66 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_67 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_68 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_70 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_71 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_72 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_74 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_75 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_76 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_77 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_78 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_80 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_81 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_82 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_83 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_84 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_85 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_86 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_87 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_88 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_89 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_90 | 0.0 | 1.0 | 0.0 |
| LGFJAAOD_91 | 1.0 | 0.0 | 1.0 |
| LGFJAAOD_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)