Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEIBIMDK_10 | 142788 | 142084 | WalR | 1.48e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OEIBIMDK_88 | 298008 | 298202 | CspR | 1.45e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OEIBIMDK_88 | 298008 | 298205 | CspA | 2.23e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OEIBIMDK_57 | 6406 | 7503 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEIBIMDK_3 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_9 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_10 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_15 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_19 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_26 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_34 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_37 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_43 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_47 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_52 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_54 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_55 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_56 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_57 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_58 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_59 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_60 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_61 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_62 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_63 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_64 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_65 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_66 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_67 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_68 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_69 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_70 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_71 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_72 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_73 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_74 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_75 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_76 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_77 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_78 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_79 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_80 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_81 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_82 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_83 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_84 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_85 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_86 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_87 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_88 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_89 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_90 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_91 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_94 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_95 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_96 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_97 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_98 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_99 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_100 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_101 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_104 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_105 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_106 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_109 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_110 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_111 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_114 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_115 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_116 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_117 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_118 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_119 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_120 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_122 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_124 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_125 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_126 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_127 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_128 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_129 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_130 | 0.0 | 1.0 | 0.0 |
| OEIBIMDK_131 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_136 | 1.0 | 0.0 | 1.0 |
| OEIBIMDK_139 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEIBIMDK_10 | 145753 | 152274 | False | Siphoviridae | VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)