Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MOMCPHGF_12 | 312705 | 312001 | WalR | 3.80e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MOMCPHGF_23 | 128262 | 128456 | CspR | 1.33e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MOMCPHGF_23 | 128262 | 128459 | CspA | 2.04e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MOMCPHGF_15 | 6358 | 7293 | rep28 | 936 / 936 | 99.89 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MOMCPHGF_1 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_2 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_3 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_4 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_5 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_6 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_7 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_8 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_9 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_10 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_11 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_12 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_13 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_14 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_15 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_16 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_17 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_19 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_21 | 1.0 | 0.0 | 1.0 |
| MOMCPHGF_23 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_34 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_36 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_37 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_38 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_39 | 0.0 | 1.0 | 0.0 |
| MOMCPHGF_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MOMCPHGF_5 | 41037 | 55024 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163 |
| MOMCPHGF_8 | 3143 | 28967 | False | Siphoviridae | VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0045, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298 |
| MOMCPHGF_12 | 315140 | 321221 | False | Siphoviridae | VOG4553, VOG4556, VOG4544, VOG4581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)