Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHPPGPCB_1 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_2 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_13 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_20 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_21 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_22 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_23 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_24 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_25 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_26 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_27 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_28 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_29 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_30 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_31 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_32 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_33 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_34 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_35 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_36 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_37 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_38 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_39 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_40 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_41 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_42 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_43 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_44 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_45 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_46 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_47 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_48 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_49 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_50 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_51 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_52 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_53 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_54 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_55 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_56 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_57 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_58 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_59 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_60 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_61 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_62 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_63 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_64 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_65 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_67 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_68 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_69 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_70 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_71 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_72 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_73 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_74 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_75 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_76 | 1.0 | 0.0 | 1.0 |
| LHPPGPCB_77 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_83 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_94 | 0.0 | 1.0 | 0.0 |
| LHPPGPCB_105 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHPPGPCB_22 | 156413 | 158605 | False | Unknown | VOG4618, |
| LHPPGPCB_50 | 265583 | 283123 | False | Siphoviridae | VOG10608, |
Phigaro v2.4.0 (Database: Jan. 2024 release)