Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJMFPCEB_40 | 158 | 2131 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJMFPCEB_40 | 206 | 2131 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HJMFPCEB_39 | 1350 | 2567 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJMFPCEB_40 | 206 | 2128 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HJMFPCEB_39 | 1347 | 2567 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HJMFPCEB_25 | 27474 | 27847 | IncX4 | 374 / 374 | 100.00 | CP002895 |
| HJMFPCEB_51 | 322 | 583 | Col(MG828) | 262 / 262 | 94.27 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJMFPCEB_1 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_2 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_3 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_4 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_5 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_6 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_7 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_8 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_9 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_10 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_11 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_12 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_13 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_14 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_15 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_16 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_17 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_18 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_19 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_20 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_21 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_22 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_23 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_24 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_25 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_26 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_27 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_28 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_29 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_30 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_31 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_32 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_33 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_34 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_36 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_37 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_38 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_39 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_40 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_41 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_42 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_43 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_44 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_45 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_46 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_47 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_48 | 1.0 | 0.0 | 1.0 |
| HJMFPCEB_55 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_66 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_67 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_68 | 0.0 | 1.0 | 0.0 |
| HJMFPCEB_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)