Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IAIFGNEM_1 | 331182 | 334814 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
| IAIFGNEM_9 | 37055 | 40381 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IAIFGNEM_1 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_2 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_3 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_4 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_5 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_6 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_7 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_8 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_9 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_10 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_11 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_12 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_13 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_14 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_15 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_16 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_17 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_18 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_20 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_21 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_22 | 0.0 | 1.0 | 0.0 |
| IAIFGNEM_23 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_24 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_25 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_26 | 1.0 | 0.0 | 1.0 |
| IAIFGNEM_28 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IAIFGNEM_3 | 268801 | 278308 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090 |
| IAIFGNEM_4 | 135524 | 159159 | False | Siphoviridae | VOG0731, VOG0992, VOG0136, VOG0991, VOG0933, VOG4334, VOG4599, VOG4605, VOG5793, VOG4582, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG5504, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG2038, VOG8506 |
| IAIFGNEM_4 | 163674 | 165621 | False | Siphoviridae | VOG8909, VOG2902 |
| IAIFGNEM_5 | 8238 | 28050 | False | Myoviridae | VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190 |
Phigaro v2.4.0 (Database: Jan. 2024 release)