Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EEMKBJPC_26 | 38118 | 38855 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
| EEMKBJPC_8 | 5857 | 7776 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EEMKBJPC_26 | 38118 | 38855 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | X72021 |
| EEMKBJPC_8 | 5857 | 7776 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.91 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EEMKBJPC_8 | 5857 | 7773 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_000691721.1 |
| EEMKBJPC_26 | 38118 | 38852 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_001038795.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EEMKBJPC_1 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_2 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_3 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_4 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_5 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_6 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_7 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_8 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_9 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_10 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_11 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_12 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_13 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_14 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_15 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_16 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_17 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_18 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_19 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_20 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_21 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_22 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_23 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_24 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_25 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_26 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_27 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_28 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_29 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_30 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_31 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_32 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_34 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_36 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_37 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_38 | 1.0 | 0.0 | 1.0 |
| EEMKBJPC_40 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_41 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_42 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_43 | 0.0 | 1.0 | 0.0 |
| EEMKBJPC_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)