Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLMBALIF_8 | 38911 | 40833 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.16 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLMBALIF_8 | 38911 | 40824 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 99.69 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLMBALIF_8 | 38911 | 40824 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 99.84 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLMBALIF_1 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_2 | 1.0 | 0.0 | 1.0 |
| CLMBALIF_3 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_4 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_5 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_6 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_7 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_8 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_9 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_10 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_11 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_12 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_13 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_14 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_15 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_16 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_17 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_18 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_19 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_20 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_21 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_22 | 1.0 | 0.0 | 1.0 |
| CLMBALIF_23 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_24 | 1.0 | 0.0 | 1.0 |
| CLMBALIF_27 | 1.0 | 0.0 | 1.0 |
| CLMBALIF_28 | 1.0 | 0.0 | 1.0 |
| CLMBALIF_30 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_31 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_32 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_33 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_34 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_35 | 0.0 | 1.0 | 0.0 |
| CLMBALIF_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLMBALIF_1 | 41416 | 48929 | False | Myoviridae | VOG0348, VOG0382, VOG0384, VOG0226 |
| CLMBALIF_22 | 4869 | 78052 | False | Siphoviridae | VOG4552, VOG2703, VOG0685, VOG0283, VOG4799, VOG3307, VOG0198, VOG9702, VOG4618, VOG4544, VOG0691, VOG0692, VOG3299, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG4633, VOG4659, VOG4645, VOG0083, VOG4783, VOG8608, VOG4705, VOG0861, VOG5087, VOG0703, VOG0866, VOG0275, VOG5539, VOG4602, VOG9667, VOG4603, VOG4552, VOG2703, VOG0685, VOG0283, VOG4799, VOG3307, VOG0198, VOG9702, VOG4618, VOG4544, VOG0691, VOG0692, VOG3299, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG4633, VOG4659, VOG4645, VOG0083, VOG4783, VOG8608 |
Phigaro v2.4.0 (Database: Jan. 2024 release)