Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BAEOCEDL_1 | 37776 | 38480 | WalR | 2.13e-113 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BAEOCEDL_9 | 1 | 936 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BAEOCEDL_8 | 1 | 1040 | rep38 | 1042 / 1104 | 89.54 | CP002655 |
| BAEOCEDL_5 | 139 | 1101 | repUS73 | 979 / 1101 | 82.12 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BAEOCEDL_1 | 0.0 | 1.0 | 0.0 |
| BAEOCEDL_2 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_3 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_4 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_5 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_6 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_7 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_8 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_9 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_10 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_11 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_12 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_13 | 1.0 | 0.0 | 1.0 |
| BAEOCEDL_14 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BAEOCEDL_1 | 1062025 | 1088563 | False | Siphoviridae | VOG1049, VOG0198, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
| BAEOCEDL_1 | 1965813 | 1998882 | False | Siphoviridae | VOG1637, VOG8294, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0198, VOG4010, VOG3643, VOG0044, VOG0044, VOG10904, VOG0189, VOG8647, VOG10904, VOG0514 |
| BAEOCEDL_1 | 2659506 | 2691964 | False | Siphoviridae | VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG7168, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6972, VOG4673, VOG0195, VOG8310, VOG0159, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG9667, VOG4548, VOG0321, VOG6495, VOG8925 |
Phigaro v2.4.0 (Database: Jan. 2024 release)