Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMJMDEOI_5 | 810777 | 814340 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| EMJMDEOI_5 | 3054 | 3908 | ErmX | ARO:3000596 | ErmX | 88.03 | 100.00 | M36726.1 |
| EMJMDEOI_4 | 1494 | 2348 | ErmX | ARO:3000596 | ErmX | 86.97 | 100.00 | M36726.1 |
| EMJMDEOI_5 | 1 | 768 | ErmX | ARO:3000596 | ErmX | 87.84 | 89.79 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EMJMDEOI_5 | 3054 | 3816 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.77 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMJMDEOI_5 | 1 | 765 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | PARTIAL_CONTIG_ENDX | 97.65 | 89.79 | WP_011117480.1 |
| EMJMDEOI_5 | 3054 | 3905 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 97.18 | 100.00 | WP_011117480.1 |
| EMJMDEOI_4 | 1494 | 2345 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.13 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMJMDEOI_1 | 0.0 | 1.0 | 0.0 |
| EMJMDEOI_2 | 0.0 | 1.0 | 0.0 |
| EMJMDEOI_3 | 0.0 | 1.0 | 0.0 |
| EMJMDEOI_4 | 0.0 | 1.0 | 0.0 |
| EMJMDEOI_5 | 0.0 | 1.0 | 0.0 |
| EMJMDEOI_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMJMDEOI_1 | 323984 | 333388 | True | Siphoviridae | VOG2842, VOG0945, VOG0944, VOG0275, VOG0275, VOG0275, VOG0944 |
| EMJMDEOI_1 | 467034 | 493026 | False | Siphoviridae | VOG5196, VOG4573, VOG5946, VOG2142, VOG0189, VOG0136, VOG10957, VOG3416, VOG9722, VOG4633, VOG5793, VOG5601, VOG1791, VOG1210, VOG4572, VOG4555, VOG2894, VOG0720, VOG5101 |
| EMJMDEOI_4 | 3256 | 11218 | True | Unknown | VOG0945, VOG0944, VOG0944, VOG5532, VOG0641, VOG9502, VOG8304, VOG0221 |
| EMJMDEOI_5 | 586232 | 613151 | False | Siphoviridae | VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG4621, VOG4557, VOG4582, VOG5793, VOG4569, VOG4599, VOG0933, VOG6301, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731 |
Phigaro v2.4.0 (Database: Jan. 2024 release)