Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJJGDCGG_25 | 11386 | 12762 | tet(L) | ARO:3000179 | tet(L) | 99.13 | 100.00 | M11036.1 |
| CJJGDCGG_25 | 9251 | 11176 | tet(M) | ARO:3000186 | tet(M) | 98.13 | 100.31 | AB039845.1 |
| CJJGDCGG_60 | 1201 | 1686 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJJGDCGG_25 | 11386 | 12762 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.78 | 100.00 | M29725 |
| CJJGDCGG_25 | 9251 | 11176 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.12 | 100.00 | X75073 |
| CJJGDCGG_60 | 1201 | 1686 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJJGDCGG_60 | 1204 | 1686 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| CJJGDCGG_25 | 11386 | 12759 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.34 | 100.00 | WP_001574277.1 |
| CJJGDCGG_25 | 9251 | 11173 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.91 | 100.00 | WP_000691736.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJJGDCGG_79 | 56464 | 57171 | WalR | 2.69e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CJJGDCGG_40 | 96860 | 96663 | CspR | 2.94e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CJJGDCGG_40 | 96860 | 96666 | CspA | 1.51e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJJGDCGG_9 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_13 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_14 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_16 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_19 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_22 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_25 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_40 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_47 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_49 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_53 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_56 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_57 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_59 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_60 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_61 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_62 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_63 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_64 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_65 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_68 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_73 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_79 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_81 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_85 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_87 | 1.0 | 0.0 | 1.0 |
| CJJGDCGG_89 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_91 | 0.0 | 1.0 | 0.0 |
| CJJGDCGG_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJJGDCGG_85 | 184606 | 207148 | False | Siphoviridae | VOG5278, VOG0195, VOG0198, VOG1315, VOG0796, VOG10227, VOG0720, VOG4564, VOG0122, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG5904, VOG5008, VOG0641 |
| CJJGDCGG_91 | 128920 | 165283 | False | Siphoviridae | VOG9667, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5998, VOG5562, VOG0275, VOG5278, VOG0195, VOG1724, VOG4918, VOG0638, VOG7894, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG4545, VOG0801, VOG3462, VOG4190, VOG4856, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)