Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_44 | 7950 | 9326 | tet(L) | ARO:3000179 | tet(L) | 99.13 | 100.00 | M11036.1 |
| BHNGKDIG_44 | 5815 | 7740 | tet(M) | ARO:3000186 | tet(M) | 98.44 | 100.31 | AB039845.1 |
| BHNGKDIG_35 | 113 | 598 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BHNGKDIG_44 | 7950 | 9326 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.78 | 100.00 | M29725 |
| BHNGKDIG_44 | 5815 | 7740 | tet(M) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | AM990992 |
| BHNGKDIG_35 | 113 | 598 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_35 | 113 | 595 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| BHNGKDIG_44 | 7950 | 9323 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.34 | 100.00 | WP_001574277.1 |
| BHNGKDIG_44 | 5815 | 7737 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.06 | 100.00 | WP_000691727.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_16 | 27857 | 27150 | WalR | 3.24e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| BHNGKDIG_23 | 95662 | 95465 | CspR | 8.07e-28 | cold shock protein | 80.30 | 100.00 | AAO82613 |
| BHNGKDIG_23 | 95662 | 95468 | CspA | 2.67e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BHNGKDIG_4 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_6 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_7 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_8 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_9 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_10 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_11 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_12 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_16 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_18 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_19 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_20 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_21 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_23 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_31 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_35 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_36 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_39 | 0.0 | 1.0 | 0.0 |
| BHNGKDIG_44 | 1.0 | 0.0 | 1.0 |
| BHNGKDIG_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)