Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDBPNLIP_313 | 804 | 1718 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
| IDBPNLIP_111 | 1 | 1353 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 68.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IDBPNLIP_111 | 1 | 1353 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 70.25 | Z21523 |
| IDBPNLIP_308 | 194 | 1411 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDBPNLIP_111 | 1 | 1353 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 70.36 | WP_002560998.1 |
| IDBPNLIP_313 | 876 | 1715 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| IDBPNLIP_308 | 194 | 1414 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.77 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDBPNLIP_11 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_22 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_33 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_44 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_55 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_66 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_77 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_88 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_99 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_110 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_111 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_122 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_133 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_144 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_155 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_166 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_177 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_188 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_199 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_210 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_221 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_222 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_233 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_244 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_255 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_266 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_277 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_288 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_289 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_290 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_291 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_292 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_293 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_294 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_295 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_296 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_297 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_298 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_299 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_300 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_301 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_302 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_303 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_304 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_305 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_306 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_307 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_308 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_309 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_310 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_311 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_313 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_314 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_315 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_316 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_317 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_318 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_319 | 1.0 | 0.0 | 1.0 |
| IDBPNLIP_320 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_325 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_336 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_347 | 0.0 | 1.0 | 0.0 |
| IDBPNLIP_358 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDBPNLIP_111 | 331331 | 339206 | False | Unknown | VOG7407, |
| IDBPNLIP_111 | 789858 | 803073 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)