Probiotic potential risk score


ARGs VFs PGs PPRS
2002.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
FAFBPGHN_298973211706tet(Q)ARO:3000191tet(Q)100.0097.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
FAFBPGHN_298973211657tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00Z21523

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
FAFBPGHN_298973511657tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_002560998.1
FAFBPGHN_882471625555estTmacrolide hydrolase EstTBLASTX98.94100.00WP_185148407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
FAFBPGHN_110.01.00.0
FAFBPGHN_220.01.00.0
FAFBPGHN_330.01.00.0
FAFBPGHN_440.01.00.0
FAFBPGHN_550.01.00.0
FAFBPGHN_660.01.00.0
FAFBPGHN_770.01.00.0
FAFBPGHN_880.01.00.0
FAFBPGHN_990.01.00.0
FAFBPGHN_1100.01.00.0
FAFBPGHN_1110.01.00.0
FAFBPGHN_1220.01.00.0
FAFBPGHN_1330.01.00.0
FAFBPGHN_1440.01.00.0
FAFBPGHN_1550.01.00.0
FAFBPGHN_1660.01.00.0
FAFBPGHN_1770.01.00.0
FAFBPGHN_1880.01.00.0
FAFBPGHN_1990.01.00.0
FAFBPGHN_2100.01.00.0
FAFBPGHN_2210.01.00.0
FAFBPGHN_2220.01.00.0
FAFBPGHN_2330.01.00.0
FAFBPGHN_2440.01.00.0
FAFBPGHN_2550.01.00.0
FAFBPGHN_2660.01.00.0
FAFBPGHN_2770.01.00.0
FAFBPGHN_2870.01.00.0
FAFBPGHN_2980.01.00.0
FAFBPGHN_3090.01.00.0
FAFBPGHN_3200.01.00.0
FAFBPGHN_3310.01.00.0
FAFBPGHN_3320.01.00.0
FAFBPGHN_3430.01.00.0
FAFBPGHN_3540.01.00.0
FAFBPGHN_3650.01.00.0
FAFBPGHN_3750.01.00.0
FAFBPGHN_3860.01.00.0
FAFBPGHN_3970.01.00.0
FAFBPGHN_4080.01.00.0
FAFBPGHN_4191.00.01.0
FAFBPGHN_4300.01.00.0
FAFBPGHN_4351.00.01.0
FAFBPGHN_4360.01.00.0
FAFBPGHN_4370.01.00.0
FAFBPGHN_4381.00.01.0
FAFBPGHN_4390.01.00.0
FAFBPGHN_4401.00.01.0
FAFBPGHN_4410.01.00.0
FAFBPGHN_4421.00.01.0
FAFBPGHN_4430.01.00.0
FAFBPGHN_4440.01.00.0
FAFBPGHN_4451.00.01.0
FAFBPGHN_4460.01.00.0
FAFBPGHN_4471.00.01.0
FAFBPGHN_4481.00.01.0
FAFBPGHN_4490.01.00.0
FAFBPGHN_4500.01.00.0
FAFBPGHN_4511.00.01.0
FAFBPGHN_4531.00.01.0
FAFBPGHN_4540.01.00.0
FAFBPGHN_4551.00.01.0
FAFBPGHN_4561.00.01.0
FAFBPGHN_4570.01.00.0
FAFBPGHN_4581.00.01.0
FAFBPGHN_4590.01.00.0
FAFBPGHN_4680.01.00.0
FAFBPGHN_4790.01.00.0
FAFBPGHN_4900.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
FAFBPGHN_33116023120633FalseUnknownVOG4652,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements