Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDNKIKJK_354 | 285 | 1199 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
| PDNKIKJK_221 | 85563 | 86915 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 68.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDNKIKJK_221 | 85563 | 86915 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.93 | 70.25 | Z21523 |
| PDNKIKJK_348 | 194 | 1411 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDNKIKJK_221 | 85563 | 86915 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 70.36 | WP_002560998.1 |
| PDNKIKJK_354 | 288 | 1127 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| PDNKIKJK_348 | 194 | 1414 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.77 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDNKIKJK_42 | 3 | 242 | PccS1_001523 | 4.32e-53 | transcriptional regulator, Fis family, Fis | 97.50 | 81.63 | ACT11296 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDNKIKJK_11 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_22 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_33 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_44 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_55 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_66 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_77 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_88 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_99 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_110 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_111 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_122 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_133 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_144 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_155 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_166 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_177 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_188 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_199 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_210 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_221 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_222 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_233 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_244 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_255 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_266 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_277 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_288 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_299 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_310 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_321 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_332 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_333 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_335 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_336 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_337 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_338 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_339 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_340 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_341 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_342 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_343 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_344 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_345 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_346 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_347 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_348 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_349 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_350 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_351 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_352 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_354 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_355 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_356 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_357 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_358 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_359 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_360 | 1.0 | 0.0 | 1.0 |
| PDNKIKJK_361 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_366 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_377 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_388 | 0.0 | 1.0 | 0.0 |
| PDNKIKJK_399 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDNKIKJK_111 | 267399 | 275274 | False | Unknown | VOG4855, |
| PDNKIKJK_222 | 180306 | 193521 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)