Probiotic potential risk score


ARGs VFs PGs PPRS
2002.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
AFFHDJII_277973211706tet(Q)ARO:3000191tet(Q)100.0097.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
AFFHDJII_277973211657tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00Z21523

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
AFFHDJII_277973511657tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_002560998.1
AFFHDJII_772471625555estTmacrolide hydrolase EstTBLASTX98.94100.00WP_185148407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
AFFHDJII_110.01.00.0
AFFHDJII_220.01.00.0
AFFHDJII_330.01.00.0
AFFHDJII_440.01.00.0
AFFHDJII_550.01.00.0
AFFHDJII_660.01.00.0
AFFHDJII_770.01.00.0
AFFHDJII_880.01.00.0
AFFHDJII_990.01.00.0
AFFHDJII_1100.01.00.0
AFFHDJII_1110.01.00.0
AFFHDJII_1220.01.00.0
AFFHDJII_1330.01.00.0
AFFHDJII_1440.01.00.0
AFFHDJII_1550.01.00.0
AFFHDJII_1660.01.00.0
AFFHDJII_1770.01.00.0
AFFHDJII_1880.01.00.0
AFFHDJII_1990.01.00.0
AFFHDJII_2100.01.00.0
AFFHDJII_2210.01.00.0
AFFHDJII_2220.01.00.0
AFFHDJII_2330.01.00.0
AFFHDJII_2440.01.00.0
AFFHDJII_2550.01.00.0
AFFHDJII_2660.01.00.0
AFFHDJII_2770.01.00.0
AFFHDJII_2880.01.00.0
AFFHDJII_2990.01.00.0
AFFHDJII_3100.01.00.0
AFFHDJII_3210.01.00.0
AFFHDJII_3320.01.00.0
AFFHDJII_3330.01.00.0
AFFHDJII_3440.01.00.0
AFFHDJII_3550.01.00.0
AFFHDJII_3660.01.00.0
AFFHDJII_3770.01.00.0
AFFHDJII_3880.01.00.0
AFFHDJII_3991.00.01.0
AFFHDJII_4100.01.00.0
AFFHDJII_4210.01.00.0
AFFHDJII_4321.00.01.0
AFFHDJII_4430.01.00.0
AFFHDJII_4440.01.00.0
AFFHDJII_4551.00.01.0
AFFHDJII_4660.01.00.0
AFFHDJII_4771.00.01.0
AFFHDJII_4880.01.00.0
AFFHDJII_4991.00.01.0
AFFHDJII_5100.01.00.0
AFFHDJII_5211.00.01.0
AFFHDJII_5321.00.01.0
AFFHDJII_5530.01.00.0
AFFHDJII_5540.01.00.0
AFFHDJII_5651.00.01.0
AFFHDJII_5760.01.00.0
AFFHDJII_5980.01.00.0
AFFHDJII_6091.00.01.0
AFFHDJII_6201.00.01.0
AFFHDJII_6310.01.00.0
AFFHDJII_6530.01.00.0
AFFHDJII_6641.00.01.0
AFFHDJII_6650.01.00.0
AFFHDJII_6760.01.00.0
AFFHDJII_6871.00.01.0
AFFHDJII_6981.00.01.0
AFFHDJII_7091.00.01.0
AFFHDJII_7200.01.00.0
AFFHDJII_7760.01.00.0
AFFHDJII_8860.01.00.0
AFFHDJII_9110.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
AFFHDJII_333008234692FalseUnknownVOG8909,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements