Probiotic potential risk score


ARGs VFs PGs PPRS
3003.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
GICFJEBL_228773089655tet(Q)ARO:3000191tet(Q)97.0497.56Z21523.1
GICFJEBL_5528424767tet(Q)ARO:3000191tet(Q)96.4197.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
GICFJEBL_228773089655tet(Q)Doxycycline, Tetracycline, Minocycline100.00100.00X58717
GICFJEBL_551471364mef(A)Erythromycin, Azithromycin95.07100.00AF227520

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
GICFJEBL_228773389655tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)EXACTX100.00100.00WP_004293868.1
GICFJEBL_5528424764tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX99.53100.00WP_063856407.1
GICFJEBL_551471367mef(A)macrolide efflux MFS transporter Mef(A)INTERNAL_STOP98.5399.75WP_012102963.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GICFJEBL_5261186himD3.53e-41regulators of systemic infection98.3965.96IHFB_SALTY
GICFJEBL_5261183ihfB1.34e-40integration host factor98.3664.21ACI06745

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GICFJEBL_110.01.00.0
GICFJEBL_220.01.00.0
GICFJEBL_330.01.00.0
GICFJEBL_440.01.00.0
GICFJEBL_550.01.00.0
GICFJEBL_660.01.00.0
GICFJEBL_770.01.00.0
GICFJEBL_880.01.00.0
GICFJEBL_990.01.00.0
GICFJEBL_1100.01.00.0
GICFJEBL_1110.01.00.0
GICFJEBL_1220.01.00.0
GICFJEBL_1330.01.00.0
GICFJEBL_1440.01.00.0
GICFJEBL_1550.01.00.0
GICFJEBL_1660.01.00.0
GICFJEBL_1770.01.00.0
GICFJEBL_1880.01.00.0
GICFJEBL_1990.01.00.0
GICFJEBL_2100.01.00.0
GICFJEBL_2210.01.00.0
GICFJEBL_2220.01.00.0
GICFJEBL_2330.01.00.0
GICFJEBL_2440.01.00.0
GICFJEBL_2550.01.00.0
GICFJEBL_2660.01.00.0
GICFJEBL_2770.01.00.0
GICFJEBL_2880.01.00.0
GICFJEBL_2990.01.00.0
GICFJEBL_3100.01.00.0
GICFJEBL_3210.01.00.0
GICFJEBL_3321.00.01.0
GICFJEBL_3330.01.00.0
GICFJEBL_3440.01.00.0
GICFJEBL_3550.01.00.0
GICFJEBL_3660.01.00.0
GICFJEBL_3770.01.00.0
GICFJEBL_3880.01.00.0
GICFJEBL_3990.01.00.0
GICFJEBL_4100.01.00.0
GICFJEBL_4210.01.00.0
GICFJEBL_4320.01.00.0
GICFJEBL_4430.01.00.0
GICFJEBL_4440.01.00.0
GICFJEBL_4550.01.00.0
GICFJEBL_4660.01.00.0
GICFJEBL_4871.00.01.0
GICFJEBL_4981.00.01.0
GICFJEBL_5091.00.01.0
GICFJEBL_5201.00.01.0
GICFJEBL_5311.00.01.0
GICFJEBL_5531.00.01.0
GICFJEBL_5540.01.00.0
GICFJEBL_5650.01.00.0
GICFJEBL_5870.01.00.0
GICFJEBL_5981.00.01.0
GICFJEBL_6061.00.01.0
GICFJEBL_6071.00.01.0
GICFJEBL_6080.01.00.0
GICFJEBL_6120.01.00.0
GICFJEBL_6230.01.00.0
GICFJEBL_6340.01.00.0
GICFJEBL_6450.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements