Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CKHONODP_3 | 51169 | 50972 | CspA | 1.72e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CKHONODP_3 | 51169 | 50975 | CspR | 3.12e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKHONODP_1 | 0.0 | 1.0 | 0.0 |
| CKHONODP_2 | 0.0 | 1.0 | 0.0 |
| CKHONODP_3 | 0.0 | 1.0 | 0.0 |
| CKHONODP_4 | 0.0 | 1.0 | 0.0 |
| CKHONODP_5 | 0.0 | 1.0 | 0.0 |
| CKHONODP_6 | 0.0 | 1.0 | 0.0 |
| CKHONODP_7 | 0.0 | 1.0 | 0.0 |
| CKHONODP_8 | 0.0 | 1.0 | 0.0 |
| CKHONODP_9 | 0.0 | 1.0 | 0.0 |
| CKHONODP_10 | 0.0 | 1.0 | 0.0 |
| CKHONODP_11 | 0.0 | 1.0 | 0.0 |
| CKHONODP_12 | 0.0 | 1.0 | 0.0 |
| CKHONODP_13 | 0.0 | 1.0 | 0.0 |
| CKHONODP_14 | 0.0 | 1.0 | 0.0 |
| CKHONODP_15 | 0.0 | 1.0 | 0.0 |
| CKHONODP_16 | 0.0 | 1.0 | 0.0 |
| CKHONODP_17 | 0.0 | 1.0 | 0.0 |
| CKHONODP_18 | 0.0 | 1.0 | 0.0 |
| CKHONODP_19 | 0.0 | 1.0 | 0.0 |
| CKHONODP_20 | 1.0 | 0.0 | 1.0 |
| CKHONODP_21 | 0.0 | 1.0 | 0.0 |
| CKHONODP_22 | 0.0 | 1.0 | 0.0 |
| CKHONODP_23 | 0.0 | 1.0 | 0.0 |
| CKHONODP_24 | 0.0 | 1.0 | 0.0 |
| CKHONODP_25 | 0.0 | 1.0 | 0.0 |
| CKHONODP_26 | 0.0 | 1.0 | 0.0 |
| CKHONODP_27 | 0.0 | 1.0 | 0.0 |
| CKHONODP_28 | 0.0 | 1.0 | 0.0 |
| CKHONODP_29 | 0.0 | 1.0 | 0.0 |
| CKHONODP_30 | 0.0 | 1.0 | 0.0 |
| CKHONODP_31 | 0.0 | 1.0 | 0.0 |
| CKHONODP_32 | 0.0 | 1.0 | 0.0 |
| CKHONODP_33 | 0.0 | 1.0 | 0.0 |
| CKHONODP_35 | 1.0 | 0.0 | 1.0 |
| CKHONODP_37 | 1.0 | 0.0 | 1.0 |
| CKHONODP_38 | 1.0 | 0.0 | 1.0 |
| CKHONODP_39 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKHONODP_6 | 16748 | 29557 | False | Myoviridae | VOG8295, VOG0025, VOG6085, VOG0226, VOG0384, VOG0382 |
| CKHONODP_20 | 3503 | 36006 | False | Siphoviridae | VOG0703, VOG1637, VOG10223, VOG4856, VOG9997, VOG3405, VOG10972, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG4618, VOG0198, VOG4799, VOG0226, VOG0186, VOG1309, VOG9460, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)