Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAKEGADM_1 | 3270959 | 3271759 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| OAKEGADM_1 | 3255275 | 3256240 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| OAKEGADM_1 | 3118982 | 3120928 | tet(Q) | ARO:3000191 | tet(Q) | 97.02 | 98.63 | Z21523.1 |
| OAKEGADM_1 | 1627079 | 1628044 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| OAKEGADM_1 | 188105 | 188920 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| OAKEGADM_3 | 4327 | 4839 | nimE | ARO:3007107 | nimE | 100.00 | 100.00 | CP036548.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OAKEGADM_1 | 1627079 | 1628044 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| OAKEGADM_1 | 3270959 | 3271759 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| OAKEGADM_3 | 4327 | 4839 | nimE | Metronidazole | 100.00 | 100.00 | AM042593 |
| OAKEGADM_1 | 188105 | 188920 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| OAKEGADM_1 | 3119016 | 3120928 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.17 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAKEGADM_1 | 1627079 | 1628041 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| OAKEGADM_1 | 3255278 | 3256240 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| OAKEGADM_1 | 3270959 | 3271756 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| OAKEGADM_3 | 4327 | 4836 | nimE | 5-nitroimidazole reductase NimE | EXACTX | 100.00 | 100.00 | WP_005812773.1 |
| OAKEGADM_1 | 188105 | 188917 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| OAKEGADM_1 | 3119015 | 3120928 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.81 | 99.53 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OAKEGADM_5 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAKEGADM_1 | 0.0 | 1.0 | 0.0 |
| OAKEGADM_2 | 1.0 | 0.0 | 1.0 |
| OAKEGADM_3 | 1.0 | 0.0 | 1.0 |
| OAKEGADM_4 | 1.0 | 0.0 | 1.0 |
| OAKEGADM_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAKEGADM_1 | 322741 | 326033 | False | Myoviridae | VOG5380, |
| OAKEGADM_1 | 5844615 | 5848005 | False | Unknown | VOG4585, |
Phigaro v2.4.0 (Database: Jan. 2024 release)