Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAPEMEPL_291 | 33025 | 32321 | WalR | 1.22e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CAPEMEPL_335 | 94730 | 94533 | CspR | 1.55e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAPEMEPL_273 | 3175 | 4233 | repUS75 | 1059 / 1059 | 99.91 | CP002393 |
| CAPEMEPL_207 | 16127 | 17188 | repUS74 | 1064 / 1062 | 92.20 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAPEMEPL_1 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_2 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_3 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_4 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_5 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_6 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_7 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_11 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_21 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_32 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_43 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_54 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_65 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_75 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_86 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_97 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_108 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_109 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_120 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_130 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_141 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_152 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_163 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_174 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_185 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_196 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_207 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_218 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_219 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_230 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_241 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_252 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_262 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_263 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_264 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_265 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_266 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_267 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_268 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_269 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_270 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_271 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_272 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_273 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_274 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_275 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_276 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_277 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_278 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_279 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_280 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_281 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_282 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_283 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_284 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_285 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_286 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_287 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_288 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_289 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_290 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_291 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_292 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_293 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_294 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_295 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_296 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_297 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_298 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_299 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_300 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_301 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_302 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_303 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_304 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_305 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_306 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_307 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_308 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_309 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_310 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_311 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_312 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_313 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_314 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_316 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_317 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_318 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_319 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_320 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_321 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_322 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_323 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_324 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_325 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_326 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_327 | 0.0 | 1.0 | 0.0 |
| CAPEMEPL_328 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_329 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_330 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_331 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_333 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_334 | 1.0 | 0.0 | 1.0 |
| CAPEMEPL_335 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CAPEMEPL_109 | 174391 | 183464 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| CAPEMEPL_313 | 82357 | 122363 | False | Siphoviridae | VOG4566, VOG0189, VOG6623, VOG4693, VOG9741, VOG2820, VOG3643, VOG9671, VOG0044, VOG1563, VOG0198, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918, VOG4573 |
Phigaro v2.4.0 (Database: Jan. 2024 release)