Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILNNDDIK_44 | 6383 | 5679 | WalR | 4.23e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ILNNDDIK_262 | 17899 | 17702 | CspR | 1.22e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ILNNDDIK_318 | 100 | 1161 | repUS74 | 1062 / 1062 | 98.78 | CP000424 |
| ILNNDDIK_42 | 222 | 837 | repUS64 | 617 / 954 | 92.22 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILNNDDIK_1 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_2 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_3 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_4 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_6 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_7 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_8 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_9 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_10 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_11 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_12 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_13 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_15 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_16 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_18 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_19 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_20 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_21 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_22 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_23 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_25 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_26 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_27 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_28 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_29 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_30 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_31 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_32 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_33 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_35 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_36 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_37 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_44 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_55 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_66 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_77 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_88 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_99 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_109 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_110 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_121 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_131 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_142 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_153 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_163 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_174 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_184 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_195 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_206 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_217 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_218 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_229 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_240 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_251 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_262 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_272 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_273 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_274 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_275 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_276 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_277 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_278 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_279 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_280 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_281 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_282 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_283 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_284 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_285 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_286 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_287 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_288 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_289 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_290 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_291 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_292 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_293 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_294 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_295 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_296 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_297 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_298 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_299 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_300 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_301 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_302 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_303 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_304 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_305 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_306 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_307 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_308 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_309 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_310 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_311 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_312 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_313 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_314 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_315 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_316 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_317 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_318 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_319 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_320 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_321 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_322 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_323 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_324 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_325 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_326 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_327 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_328 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_329 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_330 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_331 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_332 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_333 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_334 | 0.0 | 1.0 | 0.0 |
| ILNNDDIK_335 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_336 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_337 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_338 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_339 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_340 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_341 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_342 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_343 | 1.0 | 0.0 | 1.0 |
| ILNNDDIK_344 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ILNNDDIK_121 | 4356 | 12625 | False | Siphoviridae | VOG0152, VOG0195, VOG9741, VOG0536, VOG9860, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309, VOG2338 |
| ILNNDDIK_184 | 7966 | 11735 | False | Siphoviridae | VOG4632, VOG4609 |
| ILNNDDIK_195 | 4506 | 13837 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG1886, VOG4556, VOG4568 |
| ILNNDDIK_240 | 1 | 30997 | False | Siphoviridae | VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG1345, VOG4549, VOG4570, VOG0198, VOG1563, VOG3643, VOG2820, VOG4567, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG4552, VOG4829, VOG9667, VOG3479 |
Phigaro v2.4.0 (Database: Jan. 2024 release)