Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAFKBJJH_295 | 4337 | 5197 | TEM-1 | ARO:3000873 | TEM-1 | 100.00 | 100.00 | AL513383.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OAFKBJJH_295 | 4337 | 5197 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | HM749966 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAFKBJJH_295 | 4340 | 5197 | blaTEM-1 | broad-spectrum class A beta-lactamase TEM-1 | ALLELEX | 100.00 | 100.00 | WP_000027057.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OAFKBJJH_109 | 18339 | 17635 | WalR | 7.96e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OAFKBJJH_352 | 7024 | 6827 | CspR | 7.03e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OAFKBJJH_285 | 5759 | 6817 | repUS75 | 1059 / 1059 | 96.60 | CP002393 |
| OAFKBJJH_307 | 623 | 1579 | repUS64 | 958 / 954 | 92.59 | JN601038 |
| OAFKBJJH_295 | 3792 | 3922 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
| OAFKBJJH_284 | 10440 | 11474 | rep38 | 1046 / 1104 | 82.70 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAFKBJJH_11 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_22 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_33 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_43 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_54 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_65 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_76 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_87 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_98 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_109 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_110 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_121 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_132 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_143 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_154 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_165 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_176 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_187 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_198 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_208 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_219 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_220 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_231 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_242 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_253 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_264 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_275 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_282 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_283 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_284 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_285 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_286 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_287 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_288 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_289 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_290 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_291 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_292 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_293 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_294 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_295 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_296 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_297 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_298 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_299 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_300 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_301 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_302 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_303 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_304 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_306 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_307 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_308 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_309 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_310 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_311 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_313 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_314 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_315 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_316 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_318 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_319 | 1.0 | 0.0 | 1.0 |
| OAFKBJJH_320 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_321 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_331 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_341 | 0.0 | 1.0 | 0.0 |
| OAFKBJJH_352 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAFKBJJH_176 | 2 | 36199 | True | Siphoviridae | VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG8134, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0944, VOG8387, VOG0198, VOG3643, VOG0152, VOG0195, VOG4567, VOG9741, VOG0822, VOG0536, VOG9860, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG0807, VOG4552, VOG6463, VOG7581, VOG6914 |
| OAFKBJJH_352 | 73379 | 84050 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)