Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 3 | 734 | TEM-247 | ARO:3007451 | TEM-247 | 97.95 | 85.31 | ON651488.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 1 | 735 | blaTEM-168 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin | 99.32 | 85.37 | FJ919776 |
| LGAFNBCP_163 | 1 | 735 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 99.32 | 85.37 | HM749966 |
| LGAFNBCP_163 | 1 | 735 | blaTEM-82 | Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid | 99.32 | 85.37 | AF427128 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 3 | 734 | blaTEM | TEM family class A beta-lactamase | PARTIAL_CONTIG_ENDX | 98.77 | 85.31 | WP_013279314.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_127 | 34362 | 35066 | WalR | 4.59e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LGAFNBCP_20 | 350 | 153 | CspR | 5.07e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LGAFNBCP_117 | 18192 | 19250 | repUS75 | 1059 / 1059 | 100.00 | CP002393 |
| LGAFNBCP_147 | 24 | 980 | repUS64 | 958 / 954 | 92.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGAFNBCP_10 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_20 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_30 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_41 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_52 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_62 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_73 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_84 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_95 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_106 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_107 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_117 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_118 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_119 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_120 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_121 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_122 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_123 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_124 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_125 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_126 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_127 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_128 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_129 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_130 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_131 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_132 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_133 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_134 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_135 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_136 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_138 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_139 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_140 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_142 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_143 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_144 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_145 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_146 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_147 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_148 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_149 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_150 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_151 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_153 | 1.0 | 0.0 | 1.0 |
| LGAFNBCP_160 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_171 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_182 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_192 | 0.0 | 1.0 | 0.0 |
| LGAFNBCP_203 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGAFNBCP_10 | 97973 | 104303 | False | Unknown | VOG1309, VOG0186, VOG4566, VOG0189, VOG6623, VOG4693, VOG4813, VOG9759 |
| LGAFNBCP_119 | 1813 | 22431 | False | Siphoviridae | VOG4649, VOG0602, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG9583, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699 |
| LGAFNBCP_120 | 1211 | 20999 | False | Siphoviridae | VOG0054, VOG1637, VOG4705, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG9975, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)