Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GGJLFNGO_53057331280WalR1.53e-116transcriptional regulatory protein85.59100.43EPH95667
GGJLFNGO_552134021537CspR1.75e-28cold shock protein81.82100.00AAO82613
GGJLFNGO_552134021534CspA8.54e-28cold shock protein81.5498.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GGJLFNGO_10.01.00.0
GGJLFNGO_20.01.00.0
GGJLFNGO_30.01.00.0
GGJLFNGO_40.01.00.0
GGJLFNGO_50.01.00.0
GGJLFNGO_61.00.01.0
GGJLFNGO_70.01.00.0
GGJLFNGO_81.00.01.0
GGJLFNGO_91.00.01.0
GGJLFNGO_100.01.00.0
GGJLFNGO_110.01.00.0
GGJLFNGO_120.01.00.0
GGJLFNGO_130.01.00.0
GGJLFNGO_140.01.00.0
GGJLFNGO_150.01.00.0
GGJLFNGO_161.00.01.0
GGJLFNGO_170.01.00.0
GGJLFNGO_180.01.00.0
GGJLFNGO_190.01.00.0
GGJLFNGO_200.01.00.0
GGJLFNGO_210.01.00.0
GGJLFNGO_220.01.00.0
GGJLFNGO_230.01.00.0
GGJLFNGO_240.01.00.0
GGJLFNGO_251.00.01.0
GGJLFNGO_260.01.00.0
GGJLFNGO_270.01.00.0
GGJLFNGO_281.00.01.0
GGJLFNGO_291.00.01.0
GGJLFNGO_301.00.01.0
GGJLFNGO_311.00.01.0
GGJLFNGO_321.00.01.0
GGJLFNGO_330.01.00.0
GGJLFNGO_341.00.01.0
GGJLFNGO_351.00.01.0
GGJLFNGO_361.00.01.0
GGJLFNGO_371.00.01.0
GGJLFNGO_381.00.01.0
GGJLFNGO_391.00.01.0
GGJLFNGO_410.01.00.0
GGJLFNGO_421.00.01.0
GGJLFNGO_440.01.00.0
GGJLFNGO_451.00.01.0
GGJLFNGO_461.00.01.0
GGJLFNGO_471.00.01.0
GGJLFNGO_481.00.01.0
GGJLFNGO_491.00.01.0
GGJLFNGO_550.01.00.0
GGJLFNGO_660.01.00.0
GGJLFNGO_680.01.00.0
GGJLFNGO_691.00.01.0
GGJLFNGO_700.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GGJLFNGO_14852861559FalseSiphoviridaeVOG5545, VOG5336, VOG0198, VOG6422, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586
GGJLFNGO_7645313406FalseSiphoviridaeVOG11003, VOG1563, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317
GGJLFNGO_71791528839FalseSiphoviridaeVOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763
GGJLFNGO_33157778187995FalseSiphoviridaeVOG4829, VOG2785, VOG10859, VOG8987, VOG11003, VOG4552, VOG2338, VOG6128, VOG1309, VOG0186, VOG4623, VOG4566, VOG0189, VOG9667, VOG10696, VOG4693, VOG4571, VOG5545, VOG5545, VOG0637, VOG2246, VOG1250, VOG0198, VOG4618, VOG7442, VOG8462, VOG1517, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements