Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JEFBHGKP_3 | 37046 | 37753 | WalR | 2.04e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| JEFBHGKP_121 | 35689 | 35886 | CspR | 1.47e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JEFBHGKP_121 | 35689 | 35883 | CspA | 7.15e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEFBHGKP_1 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_2 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_3 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_13 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_20 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_31 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_40 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_51 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_61 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_70 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_81 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_87 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_88 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_89 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_90 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_91 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_92 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_93 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_94 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_95 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_96 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_97 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_98 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_99 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_100 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_101 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_102 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_103 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_104 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_105 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_106 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_107 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_108 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_109 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_110 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_111 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_112 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_113 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_114 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_115 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_116 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_117 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_118 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_120 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_121 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_122 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_123 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_124 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_125 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_127 | 1.0 | 0.0 | 1.0 |
| JEFBHGKP_132 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_143 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_154 | 0.0 | 1.0 | 0.0 |
| JEFBHGKP_165 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEFBHGKP_1 | 37891 | 72229 | False | Myoviridae | VOG0703, VOG1637, VOG5008, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG9813, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG3435, VOG4711, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG8681, VOG0249, VOG0198, VOG7235, VOG9107, VOG4813, VOG4693, VOG0025, VOG4566, VOG0514, VOG6545, VOG0322, VOG0535, VOG9454, VOG6357 |
Phigaro v2.4.0 (Database: Jan. 2024 release)