Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFPNPJOI_333 | 57838 | 58032 | CspA | 3.76e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFPNPJOI_1 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_2 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_3 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_4 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_5 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_6 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_9 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_12 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_13 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_14 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_15 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_16 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_17 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_18 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_20 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_23 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_25 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_26 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_27 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_28 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_29 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_30 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_31 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_32 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_36 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_47 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_58 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_69 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_80 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_91 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_102 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_112 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_113 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_122 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_133 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_144 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_155 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_166 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_177 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_188 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_199 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_210 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_221 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_222 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_233 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_244 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_255 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_266 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_277 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_287 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_297 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_307 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_318 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_322 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_323 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_324 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_325 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_326 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_327 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_328 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_329 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_330 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_331 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_332 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_333 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_334 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_335 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_336 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_337 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_338 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_339 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_340 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_341 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_342 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_343 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_344 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_345 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_346 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_347 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_348 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_349 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_350 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_351 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_352 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_353 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_354 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_355 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_356 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_357 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_358 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_359 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_360 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_361 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_362 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_363 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_364 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_365 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_366 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_367 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_368 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_369 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_370 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_371 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_372 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_373 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_374 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_375 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_376 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_377 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_378 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_379 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_380 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_381 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_382 | 1.0 | 0.0 | 1.0 |
| CFPNPJOI_383 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_384 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_385 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_386 | 0.0 | 1.0 | 0.0 |
| CFPNPJOI_387 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFPNPJOI_14 | 4281 | 13043 | False | Siphoviridae | VOG4552, VOG3851, VOG6495, VOG4602, VOG3304, VOG6421, VOG0221, VOG8811 |
| CFPNPJOI_69 | 13578 | 35417 | False | Siphoviridae | VOG1344, VOG3303, VOG0866, VOG3349, VOG2557, VOG4581, VOG4544, VOG4571, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG4552, VOG0207, VOG4586, VOG0209 |
Phigaro v2.4.0 (Database: Jan. 2024 release)