Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BJNMJNHN_1 | 3096423 | 3097127 | WalR | 1.83e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BJNMJNHN_5 | 7577 | 8611 | rep38 | 1045 / 1104 | 81.53 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BJNMJNHN_1 | 0.0 | 1.0 | 0.0 |
| BJNMJNHN_2 | 1.0 | 0.0 | 1.0 |
| BJNMJNHN_3 | 1.0 | 0.0 | 1.0 |
| BJNMJNHN_4 | 1.0 | 0.0 | 1.0 |
| BJNMJNHN_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BJNMJNHN_1 | 773660 | 803145 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG6005, VOG9507, VOG0044, VOG3643, VOG6414, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG5904, VOG4605, VOG4599, VOG10957, VOG10608, VOG10972, VOG8870 |
| BJNMJNHN_1 | 1000178 | 1004604 | False | Siphoviridae | VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG4609 |
| BJNMJNHN_1 | 1008066 | 1028440 | False | Siphoviridae | VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG7168, VOG5852, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917 |
| BJNMJNHN_1 | 1926174 | 1950207 | False | Siphoviridae | VOG3498, VOG4763, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG0720, VOG10227, VOG0796, VOG0045 |
| BJNMJNHN_1 | 2642832 | 2666697 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198 |
| BJNMJNHN_3 | 8390 | 28168 | False | Siphoviridae | VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)