Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 25 | 29 | 38.29 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KODHIHGM_1 | 1142428 | 1143297 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| KODHIHGM_1 | 1141835 | 1142428 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| KODHIHGM_1 | 1379870 | 1380679 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.88 | 100.00 | WP_002948020 |
| KODHIHGM_1 | 1141835 | 1142428 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| KODHIHGM_1 | 1380663 | 1381619 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.79 | 100.00 | WP_011226328 |
| KODHIHGM_1 | 1381616 | 1382764 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | WP_041828290 |
| KODHIHGM_1 | 1141835 | 1142428 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| KODHIHGM_1 | 1386260 | 1387111 | rfbD | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | WP_014621820 |
| KODHIHGM_1 | 905038 | 906696 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| KODHIHGM_1 | 1378665 | 1379870 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011226326 |
| KODHIHGM_1 | 43688 | 44527 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| KODHIHGM_1 | 1382873 | 1383883 | STU_RS16260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226330 |
| KODHIHGM_1 | 1375809 | 1377593 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.44 | 100.00 | WP_011226325 |
| KODHIHGM_1 | 1377590 | 1378645 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.43 | 100.00 | WP_002948022 |
| KODHIHGM_1 | 1179683 | 1180444 | srtA | 0.0 | Sortase A | Exoenzyme | 98.82 | 100.00 | - |
| KODHIHGM_1 | 1002924 | 1004339 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 98.59 | 100.00 | WP_011681165 |
| KODHIHGM_1 | 1084181 | 1084974 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 100.25 | - |
| KODHIHGM_1 | 1015331 | 1016062 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011226048 |
| KODHIHGM_1 | 1015331 | 1016062 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.09 | 100.00 | WP_011681176 |
| KODHIHGM_1 | 1015331 | 1016062 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 97.68 | 100.00 | WP_011227248 |
| KODHIHGM_1 | 1383886 | 1385157 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 97.48 | 99.76 | WP_011226331 |
| KODHIHGM_1 | 1016063 | 1017523 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.47 | 100.00 | WP_011681177 |
| KODHIHGM_1 | 1013880 | 1014620 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.17 | 100.00 | WP_011226046 |
| KODHIHGM_1 | 1016063 | 1017523 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 97.12 | 100.21 | WP_011226049 |
| KODHIHGM_1 | 1016063 | 1017523 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.99 | 100.21 | WP_041827043 |
| KODHIHGM_1 | 1013880 | 1014620 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 96.76 | 100.00 | WP_011681174 |
| KODHIHGM_1 | 1013885 | 1014620 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.20 | 98.13 | WP_011227246 |
| KODHIHGM_1 | 1014630 | 1015322 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011227247 |
| KODHIHGM_1 | 1014630 | 1015322 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011226047 |
| KODHIHGM_1 | 1012456 | 1013823 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 95.39 | 100.00 | WP_011226045 |
| KODHIHGM_1 | 1012458 | 1013823 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 94.14 | 99.85 | WP_011681173 |
| KODHIHGM_1 | 1014630 | 1015322 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011681175 |
| KODHIHGM_1 | 639279 | 640582 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| KODHIHGM_1 | 1677538 | 1678548 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| KODHIHGM_1 | 152238 | 153521 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| KODHIHGM_1 | 1140360 | 1141406 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KODHIHGM_1 | 1183131 | 1184114 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| KODHIHGM_1 | 747536 | 748609 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| KODHIHGM_1 | 555594 | 556562 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| KODHIHGM_1 | 1554312 | 1556615 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.84 | 99.22 | AAK74619 |
| KODHIHGM_1 | 1272495 | 1273976 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.31 | 100.00 | ABJ54480 |
| KODHIHGM_1 | 778622 | 780868 | metE | 0.0 | methionine biosynthesis enzymes | 91.72 | 100.00 | AAK74738 |
| KODHIHGM_1 | 72296 | 73294 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| KODHIHGM_1 | 27205 | 28176 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| KODHIHGM_1 | 1438240 | 1437089 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| KODHIHGM_1 | 1402081 | 1400093 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.99 | 100.00 | AE014259_2 |
| KODHIHGM_1 | 1165871 | 1164141 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 87.87 | 100.00 | AAK34199 |
| KODHIHGM_1 | 1884801 | 1883323 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.42 | 100.00 | ADE32434 |
| KODHIHGM_1 | 639279 | 640580 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| KODHIHGM_1 | 1869613 | 1867721 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| KODHIHGM_1 | 783793 | 782084 | PGM | 0.0 | phosphoglucomutase | 83.71 | 99.65 | ACH87041 |
| KODHIHGM_1 | 1719894 | 1720904 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| KODHIHGM_1 | 933109 | 931748 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| KODHIHGM_1 | 1772998 | 1771106 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| KODHIHGM_1 | 624844 | 625734 | bglB | 1.36e-178 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| KODHIHGM_1 | 846969 | 846031 | SP_0676 | 2.41e-167 | transcription facot | 81.15 | 97.20 | AAK74821 |
| KODHIHGM_1 | 781060 | 781917 | metF | 1.56e-164 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| KODHIHGM_1 | 1056488 | 1055784 | covR | 4.48e-131 | responder protein | 85.53 | 100.00 | AAK71319 |
| KODHIHGM_1 | 1231303 | 1230632 | rr01 | 3.07e-124 | response regulator | 83.93 | 99.56 | CAB54566 |
| KODHIHGM_1 | 1056488 | 1055784 | walR | 1.89e-121 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| KODHIHGM_1 | 313462 | 314148 | CovR | 1.03e-117 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| KODHIHGM_1 | 787747 | 788415 | CiaR | 2.07e-117 | two-component response regulator | 84.31 | 99.55 | AAK74935 |
| KODHIHGM_1 | 787747 | 788418 | ciaR | 2.03e-115 | two component system response regulator | 82.14 | 99.12 | AIK75708 |
| KODHIHGM_1 | 73570 | 73944 | SpxA2 | 1.18e-69 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| KODHIHGM_1 | 944467 | 944868 | SpxA1 | 3.85e-66 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| KODHIHGM_1 | 153679 | 154179 | RopE (M5005_Spy_1611) | 5.03e-75 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| KODHIHGM_1 | 1554312 | 1556609 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.81 | 98.08 | MYN69560 |
| KODHIHGM_1 | 1758526 | 1757507 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KODHIHGM_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)