Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 25 | 32 | 40.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DFBKCNKL_4 | 19720 | 20589 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| DFBKCNKL_4 | 20589 | 21182 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| DFBKCNKL_4 | 20589 | 21182 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| DFBKCNKL_54 | 186064 | 187020 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.79 | 100.00 | WP_011226328 |
| DFBKCNKL_54 | 187004 | 187813 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | WP_002948020 |
| DFBKCNKL_54 | 184919 | 186067 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | WP_041828290 |
| DFBKCNKL_4 | 20589 | 21182 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| DFBKCNKL_54 | 187813 | 189018 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011226326 |
| DFBKCNKL_54 | 190090 | 191874 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.55 | 100.00 | WP_011226325 |
| DFBKCNKL_54 | 180572 | 181423 | rfbD | 0.0 | Capsule | Immune modulation | 99.53 | 100.00 | WP_014621820 |
| DFBKCNKL_54 | 183800 | 184810 | STU_RS16260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226330 |
| DFBKCNKL_54 | 189038 | 190093 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.43 | 100.00 | WP_002948022 |
| DFBKCNKL_13 | 93561 | 95219 | fbp54 | 0.0 | FBPs | Adherence | 99.34 | 100.00 | WP_011227179 |
| DFBKCNKL_9 | 111575 | 112306 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | WP_011681176 |
| DFBKCNKL_9 | 111575 | 112306 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.77 | 100.00 | WP_011226048 |
| DFBKCNKL_9 | 111575 | 112306 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.63 | 100.00 | WP_011227248 |
| DFBKCNKL_9 | 44780 | 45568 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 99.75 | - |
| DFBKCNKL_10 | 647 | 2062 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 97.81 | 100.00 | WP_011681165 |
| DFBKCNKL_2 | 49229 | 49990 | srtA | 0.0 | Sortase A | Exoenzyme | 97.64 | 100.00 | - |
| DFBKCNKL_24 | 16103 | 17062 | cbpD | 0.0 | Autolysin | Exoenzyme | 97.63 | 99.90 | WP_082302295 |
| DFBKCNKL_54 | 182526 | 183797 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 97.48 | 99.76 | WP_011226331 |
| DFBKCNKL_9 | 110114 | 111574 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.47 | 100.00 | WP_011681177 |
| DFBKCNKL_9 | 110114 | 111574 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.85 | 100.21 | WP_011226049 |
| DFBKCNKL_9 | 110114 | 111574 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 95.89 | 100.21 | WP_041827043 |
| DFBKCNKL_9 | 112315 | 113007 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011227247 |
| DFBKCNKL_9 | 112315 | 113007 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011226047 |
| DFBKCNKL_9 | 113832 | 115197 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 95.17 | 99.85 | WP_011681173 |
| DFBKCNKL_9 | 113017 | 113775 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 93.94 | 100.94 | WP_011681174 |
| DFBKCNKL_9 | 113832 | 115199 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 93.93 | 100.00 | WP_011226045 |
| DFBKCNKL_9 | 113017 | 113775 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 93.81 | 100.94 | WP_011226046 |
| DFBKCNKL_9 | 113017 | 113770 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 93.24 | 99.07 | WP_011227246 |
| DFBKCNKL_9 | 112315 | 113007 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011681175 |
| DFBKCNKL_22 | 116321 | 117624 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| DFBKCNKL_51 | 14446 | 15456 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 87.45 | 99.90 | WP_002986042 |
| DFBKCNKL_4 | 21611 | 22657 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| DFBKCNKL_39 | 60017 | 61300 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.58 | 99.77 | WP_000107753 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DFBKCNKL_2 | 46542 | 45559 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| DFBKCNKL_22 | 13908 | 12835 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| DFBKCNKL_22 | 201022 | 200054 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| DFBKCNKL_54 | 15603 | 13300 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| DFBKCNKL_54 | 286803 | 285322 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.31 | 100.00 | ABJ54480 |
| DFBKCNKL_21 | 11368 | 9122 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| DFBKCNKL_44 | 2088 | 1096 | recA | 0.0 | DNA recombination and repair | 91.24 | 85.31 | AAL00560 |
| DFBKCNKL_48 | 15876 | 14905 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| DFBKCNKL_54 | 129388 | 130539 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| DFBKCNKL_54 | 165280 | 167268 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| DFBKCNKL_2 | 62738 | 64468 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| DFBKCNKL_1 | 27631 | 29109 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.42 | 100.00 | ADE32434 |
| DFBKCNKL_22 | 117624 | 116323 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| DFBKCNKL_1 | 42820 | 44712 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| DFBKCNKL_21 | 6197 | 7906 | PGM | 0.0 | phosphoglucomutase | 83.89 | 99.65 | ACH87041 |
| DFBKCNKL_12 | 14694 | 13684 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| DFBKCNKL_13 | 69259 | 70620 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| DFBKCNKL_1 | 140258 | 142150 | PepO | 0.0 | endopeptidase | 80.03 | 100.00 | ABF32980 |
| DFBKCNKL_22 | 132059 | 131169 | bglB | 7.44e-178 | putative phospho--glucosidase | 88.22 | 99.66 | AAK33487 |
| DFBKCNKL_15 | 10453 | 11391 | SP_0676 | 2.76e-169 | transcription facot | 81.15 | 97.20 | AAK74821 |
| DFBKCNKL_21 | 8930 | 8073 | metF | 1.50e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| DFBKCNKL_9 | 73406 | 74110 | covR | 2.83e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| DFBKCNKL_54 | 305779 | 306450 | rr01 | 5.09e-125 | response regulator | 83.93 | 99.56 | CAB54566 |
| DFBKCNKL_9 | 73406 | 74110 | walR | 1.19e-122 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| DFBKCNKL_21 | 2243 | 1575 | CiaR | 1.64e-119 | two-component response regulator | 84.75 | 99.55 | AAK74935 |
| DFBKCNKL_36 | 8423 | 7737 | CovR | 4.43e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| DFBKCNKL_21 | 2243 | 1572 | ciaR | 1.78e-117 | two component system response regulator | 82.59 | 99.12 | AIK75708 |
| DFBKCNKL_44 | 784 | 389 | SpxA2 | 8.17e-76 | transcriptional regulator | 90.15 | 100.00 | ERL21461 |
| DFBKCNKL_27 | 25699 | 25412 | spr0479 | 2.98e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| DFBKCNKL_22 | 235431 | 235177 | spr1327 | 3.88e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| DFBKCNKL_1 | 85421 | 85158 | spr0175 | 6.79e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| DFBKCNKL_1 | 84594 | 84328 | spr0177 | 1.49e-33 | essential gene | 84.27 | 88.12 | AAK98981 |
| DFBKCNKL_39 | 59859 | 59359 | RopE (M5005_Spy_1611) | 1.79e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| DFBKCNKL_54 | 15603 | 13306 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| DFBKCNKL_1 | 154667 | 155686 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 95.88 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFBKCNKL_1 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_2 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_3 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_4 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_5 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_9 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_10 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_11 | 1.0 | 0.0 | 1.0 |
| DFBKCNKL_12 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_13 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_14 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_15 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_16 | 1.0 | 0.0 | 1.0 |
| DFBKCNKL_17 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_19 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_20 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_21 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_22 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_23 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_24 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_26 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_27 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_30 | 1.0 | 0.0 | 1.0 |
| DFBKCNKL_31 | 1.0 | 0.0 | 1.0 |
| DFBKCNKL_34 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_36 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_37 | 1.0 | 0.0 | 1.0 |
| DFBKCNKL_38 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_39 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_40 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_42 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_43 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_44 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_46 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_48 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_49 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_51 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_52 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_53 | 0.0 | 1.0 | 0.0 |
| DFBKCNKL_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)