Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPDGCLO_152 | 28826 | 30751 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LCPDGCLO_120 | 21251 | 21985 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCPDGCLO_152 | 28826 | 30751 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LCPDGCLO_120 | 21251 | 21985 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPDGCLO_120 | 21251 | 21982 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| LCPDGCLO_152 | 28829 | 30751 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCPDGCLO_1 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_2 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_3 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_4 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_5 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_6 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_7 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_8 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_9 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_10 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_11 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_12 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_13 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_14 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_15 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_16 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_17 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_18 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_19 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_20 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_21 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_22 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_23 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_24 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_25 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_27 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_28 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_29 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_30 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_31 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_32 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_33 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_34 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_35 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_36 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_37 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_38 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_39 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_40 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_41 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_42 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_43 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_44 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_45 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_46 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_47 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_55 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_66 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_77 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_88 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_99 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_108 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_109 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_120 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_131 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_142 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_152 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_163 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_174 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_184 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_195 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_206 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_217 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_218 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_227 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_236 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_247 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_257 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_268 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_276 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_287 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_298 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_309 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_320 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_321 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_331 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_342 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_353 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_364 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_373 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_384 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_395 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_406 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_417 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_426 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_427 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_428 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_429 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_430 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_431 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_432 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_433 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_434 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_435 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_436 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_437 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_438 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_439 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_440 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_441 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_442 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_443 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_444 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_445 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_446 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_447 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_448 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_449 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_450 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_451 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_452 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_453 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_454 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_455 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_456 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_457 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_458 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_459 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_460 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_461 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_462 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_463 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_464 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_465 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_466 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_467 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_468 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_469 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_470 | 1.0 | 0.0 | 1.0 |
| LCPDGCLO_471 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_472 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_473 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_474 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_475 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_476 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_477 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_478 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_479 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_480 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_481 | 0.0 | 1.0 | 0.0 |
| LCPDGCLO_482 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCPDGCLO_236 | 60158 | 64933 | False | Siphoviridae | VOG4556, |
| LCPDGCLO_268 | 47640 | 58515 | False | Siphoviridae | VOG0749, |
| LCPDGCLO_342 | 54493 | 56554 | False | Unknown | VOG9068, |
| LCPDGCLO_431 | 16468 | 24975 | True | Myoviridae | VOG5396, |
Phigaro v2.4.0 (Database: Jan. 2024 release)