Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AGEDPJBN_11 | 21738 | 21034 | WalR | 4.15e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| AGEDPJBN_115 | 71485 | 71291 | CspR | 3.50e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AGEDPJBN_115 | 71485 | 71288 | CspA | 5.36e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AGEDPJBN_76 | 1194 | 1822 | rep38 | 630 / 903 | 87.62 | CP005943 |
| AGEDPJBN_56 | 1604 | 2526 | repUS73 | 937 / 1101 | 82.18 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AGEDPJBN_1 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_2 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_3 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_5 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_6 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_7 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_8 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_9 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_10 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_11 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_12 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_13 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_14 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_15 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_16 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_17 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_18 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_20 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_21 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_22 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_23 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_31 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_37 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_42 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_44 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_46 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_48 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_49 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_50 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_51 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_52 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_53 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_54 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_55 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_56 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_57 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_58 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_60 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_66 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_70 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_71 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_72 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_73 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_74 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_75 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_76 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_77 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_78 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_79 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_80 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_81 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_82 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_83 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_84 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_85 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_86 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_87 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_88 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_89 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_90 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_91 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_92 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_93 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_94 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_95 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_96 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_97 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_98 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_99 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_100 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_101 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_102 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_103 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_104 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_105 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_106 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_107 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_108 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_109 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_110 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_111 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_112 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_113 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_114 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_115 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_116 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_117 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_118 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_119 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_120 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_121 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_122 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_123 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_124 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_125 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_126 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_127 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_128 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_129 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_130 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_131 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_132 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_133 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_134 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_135 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_136 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_137 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_138 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_139 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_140 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_141 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_142 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_143 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_144 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_145 | 1.0 | 0.0 | 1.0 |
| AGEDPJBN_146 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_147 | 0.0 | 1.0 | 0.0 |
| AGEDPJBN_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AGEDPJBN_55 | 23110 | 33648 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| AGEDPJBN_82 | 48116 | 77453 | False | Siphoviridae | VOG1309, VOG0186, VOG4855, VOG4693, VOG0198, VOG0045, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG1320, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG8052, VOG8438, VOG4334, VOG4705 |
| AGEDPJBN_93 | 75063 | 105845 | False | Siphoviridae | VOG0275, VOG10904, VOG0226, VOG7991, VOG4841, VOG6716, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG1050 |
Phigaro v2.4.0 (Database: Jan. 2024 release)