Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGDKJDJP_13 | 330520 | 329816 | WalR | 5.06e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NGDKJDJP_34 | 98841 | 99035 | CspR | 8.27e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NGDKJDJP_34 | 98841 | 99038 | CspA | 1.27e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NGDKJDJP_21 | 907 | 1860 | repUS64 | 954 / 954 | 97.90 | JN601038 |
| NGDKJDJP_16 | 5210 | 6310 | repUS73 | 1101 / 1101 | 95.10 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGDKJDJP_1 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_2 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_3 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_4 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_7 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_8 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_9 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_10 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_11 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_12 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_13 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_14 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_15 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_16 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_17 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_18 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_19 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_21 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_23 | 1.0 | 0.0 | 1.0 |
| NGDKJDJP_24 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_31 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_32 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_33 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_34 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_35 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_36 | 0.0 | 1.0 | 0.0 |
| NGDKJDJP_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGDKJDJP_24 | 244047 | 271504 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
| NGDKJDJP_31 | 228617 | 251757 | False | Siphoviridae | VOG6422, VOG4918, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| NGDKJDJP_31 | 258052 | 267799 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8925, VOG0181, VOG8222, VOG1563, VOG1638, VOG0787, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)