Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JBNBAEPM_44222371221667WalR1.99e-114transcriptional regulatory protein84.25100.00EPH95667
JBNBAEPM_1103627436468CspR5.39e-30cold shock protein84.6198.48AAO82613
JBNBAEPM_1103627436471CspA8.27e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
JBNBAEPM_10018812816rep28936 / 936100.00CP005948
JBNBAEPM_1054941280rep38787 / 90396.06CP005943
JBNBAEPM_1155441042repUS54500 / 69084.80EU185047

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
JBNBAEPM_110.01.00.0
JBNBAEPM_220.01.00.0
JBNBAEPM_310.01.00.0
JBNBAEPM_330.01.00.0
JBNBAEPM_340.01.00.0
JBNBAEPM_350.01.00.0
JBNBAEPM_370.01.00.0
JBNBAEPM_380.01.00.0
JBNBAEPM_420.01.00.0
JBNBAEPM_430.01.00.0
JBNBAEPM_440.01.00.0
JBNBAEPM_450.01.00.0
JBNBAEPM_460.01.00.0
JBNBAEPM_470.01.00.0
JBNBAEPM_480.01.00.0
JBNBAEPM_490.01.00.0
JBNBAEPM_500.01.00.0
JBNBAEPM_510.01.00.0
JBNBAEPM_520.01.00.0
JBNBAEPM_530.01.00.0
JBNBAEPM_540.01.00.0
JBNBAEPM_550.01.00.0
JBNBAEPM_560.01.00.0
JBNBAEPM_570.01.00.0
JBNBAEPM_580.01.00.0
JBNBAEPM_590.01.00.0
JBNBAEPM_601.00.01.0
JBNBAEPM_610.01.00.0
JBNBAEPM_620.01.00.0
JBNBAEPM_631.00.01.0
JBNBAEPM_641.00.01.0
JBNBAEPM_650.01.00.0
JBNBAEPM_660.01.00.0
JBNBAEPM_671.00.01.0
JBNBAEPM_681.00.01.0
JBNBAEPM_691.00.01.0
JBNBAEPM_701.00.01.0
JBNBAEPM_710.01.00.0
JBNBAEPM_721.00.01.0
JBNBAEPM_731.00.01.0
JBNBAEPM_740.01.00.0
JBNBAEPM_750.01.00.0
JBNBAEPM_761.00.01.0
JBNBAEPM_770.01.00.0
JBNBAEPM_781.00.01.0
JBNBAEPM_790.01.00.0
JBNBAEPM_801.00.01.0
JBNBAEPM_811.00.01.0
JBNBAEPM_821.00.01.0
JBNBAEPM_830.01.00.0
JBNBAEPM_841.00.01.0
JBNBAEPM_850.01.00.0
JBNBAEPM_860.01.00.0
JBNBAEPM_871.00.01.0
JBNBAEPM_880.01.00.0
JBNBAEPM_891.00.01.0
JBNBAEPM_901.00.01.0
JBNBAEPM_911.00.01.0
JBNBAEPM_921.00.01.0
JBNBAEPM_931.00.01.0
JBNBAEPM_941.00.01.0
JBNBAEPM_951.00.01.0
JBNBAEPM_961.00.01.0
JBNBAEPM_970.01.00.0
JBNBAEPM_981.00.01.0
JBNBAEPM_990.01.00.0
JBNBAEPM_1001.00.01.0
JBNBAEPM_1011.00.01.0
JBNBAEPM_1021.00.01.0
JBNBAEPM_1031.00.01.0
JBNBAEPM_1051.00.01.0
JBNBAEPM_1061.00.01.0
JBNBAEPM_1071.00.01.0
JBNBAEPM_1081.00.01.0
JBNBAEPM_1091.00.01.0
JBNBAEPM_1100.01.00.0
JBNBAEPM_1111.00.01.0
JBNBAEPM_1121.00.01.0
JBNBAEPM_1131.00.01.0
JBNBAEPM_1141.00.01.0
JBNBAEPM_1151.00.01.0
JBNBAEPM_1161.00.01.0
JBNBAEPM_1171.00.01.0
JBNBAEPM_1181.00.01.0
JBNBAEPM_1191.00.01.0
JBNBAEPM_1201.00.01.0
JBNBAEPM_1210.01.00.0
JBNBAEPM_1231.00.01.0
JBNBAEPM_1241.00.01.0
JBNBAEPM_1251.00.01.0
JBNBAEPM_1261.00.01.0
JBNBAEPM_1281.00.01.0
JBNBAEPM_1291.00.01.0
JBNBAEPM_1300.01.00.0
JBNBAEPM_1311.00.01.0
JBNBAEPM_1320.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
JBNBAEPM_35210323854FalseSiphoviridaeVOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4619, VOG4856, VOG9640, VOG0804, VOG7896
JBNBAEPM_42328323516FalseSiphoviridaeVOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637
JBNBAEPM_483099754264FalseSiphoviridaeVOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841
JBNBAEPM_5593871104602FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements